Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.6■□□□□ 0.09
LDB3O75112 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 GGT3P-204ENST00000453783 1664 ntBASIC15.6■□□□□ 0.09
LDB3O75112 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.6■□□□□ 0.09
LDB3O75112 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
LDB3O75112 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.6■□□□□ 0.09
LDB3O75112 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.6■□□□□ 0.09
LDB3O75112 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.6■□□□□ 0.09
LDB3O75112 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.6■□□□□ 0.09
LDB3O75112 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
LDB3O75112 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.6■□□□□ 0.09
LDB3O75112 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.6■□□□□ 0.09
LDB3O75112 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.6■□□□□ 0.09
LDB3O75112 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.6■□□□□ 0.09
LDB3O75112 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.6■□□□□ 0.09
LDB3O75112 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.6■□□□□ 0.09
LDB3O75112 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.6■□□□□ 0.09
LDB3O75112 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
LDB3O75112 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.6■□□□□ 0.09
LDB3O75112 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
LDB3O75112 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.6■□□□□ 0.09
LDB3O75112 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.6■□□□□ 0.09
LDB3O75112 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.6■□□□□ 0.09
LDB3O75112 AC092902.6-201ENST00000641783 218 ntBASIC15.6■□□□□ 0.09
LDB3O75112 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
LDB3O75112 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 PCDH8P1-201ENST00000428983 2773 ntBASIC15.6■□□□□ 0.09
LDB3O75112 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.6■□□□□ 0.09
LDB3O75112 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.6■□□□□ 0.09
LDB3O75112 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
LDB3O75112 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 AC016027.1-202ENST00000607927 1699 ntBASIC15.6■□□□□ 0.09
LDB3O75112 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
LDB3O75112 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
LDB3O75112 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LDB3O75112 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
LDB3O75112 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.59■□□□□ 0.09
LDB3O75112 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.59■□□□□ 0.09
LDB3O75112 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.59■□□□□ 0.09
LDB3O75112 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
LDB3O75112 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
LDB3O75112 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.59■□□□□ 0.09
LDB3O75112 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
LDB3O75112 HTR5BP-201ENST00000430851 1154 ntBASIC15.59■□□□□ 0.09
LDB3O75112 AC112482.1-201ENST00000492080 688 ntBASIC15.59■□□□□ 0.09
LDB3O75112 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
LDB3O75112 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.59■□□□□ 0.09
LDB3O75112 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.59■□□□□ 0.09
LDB3O75112 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.59■□□□□ 0.09
LDB3O75112 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.59■□□□□ 0.09
LDB3O75112 AL161645.1-201ENST00000622716 1255 ntBASIC15.59■□□□□ 0.09
LDB3O75112 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.59■□□□□ 0.09
LDB3O75112 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.59■□□□□ 0.09
LDB3O75112 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.59■□□□□ 0.09
LDB3O75112 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.59■□□□□ 0.09
LDB3O75112 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
LDB3O75112 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.59■□□□□ 0.09
LDB3O75112 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.59■□□□□ 0.09
LDB3O75112 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.59■□□□□ 0.09
LDB3O75112 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 AC092364.2-201ENST00000596710 2692 ntBASIC15.59■□□□□ 0.09
LDB3O75112 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LDB3O75112 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.58■□□□□ 0.09
LDB3O75112 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
LDB3O75112 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
LDB3O75112 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
LDB3O75112 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.58■□□□□ 0.09
LDB3O75112 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.58■□□□□ 0.09
LDB3O75112 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.58■□□□□ 0.09
LDB3O75112 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
LDB3O75112 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms