Protein–RNA interactions for Protein: O43707

ACTN4, Alpha-actinin-4, humanhuman

Known RBP Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4O43707 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ACTN4O43707 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
ACTN4O43707 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
ACTN4O43707 AC004870.1-201ENST00000315132 882 ntBASIC18.61■□□□□ 0.57
ACTN4O43707 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
ACTN4O43707 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ACTN4O43707 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
ACTN4O43707 MRPL3P1-201ENST00000400109 1033 ntBASIC18.61■□□□□ 0.57
ACTN4O43707 HMGA1P7-201ENST00000406908 502 ntBASIC18.61■□□□□ 0.57
ACTN4O43707 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.61■□□□□ 0.57
ACTN4O43707 AL031284.1-201ENST00000419297 478 ntBASIC18.61■□□□□ 0.57
ACTN4O43707 AL450487.1-201ENST00000426799 995 ntBASIC18.61■□□□□ 0.57
ACTN4O43707 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.61■□□□□ 0.57
ACTN4O43707 PRSS29P-201ENST00000440800 595 ntBASIC18.61■□□□□ 0.57
ACTN4O43707 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.61■□□□□ 0.57
ACTN4O43707 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.61■□□□□ 0.57
ACTN4O43707 MIR4515-201ENST00000584082 81 ntBASIC18.61■□□□□ 0.57
ACTN4O43707 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ACTN4O43707 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ACTN4O43707 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ACTN4O43707 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
ACTN4O43707 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ACTN4O43707 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ACTN4O43707 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.61■□□□□ 0.57
ACTN4O43707 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC18.61■□□□□ 0.57
ACTN4O43707 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ACTN4O43707 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
ACTN4O43707 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ACTN4O43707 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
ACTN4O43707 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
ACTN4O43707 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
ACTN4O43707 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.6■□□□□ 0.57
ACTN4O43707 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
ACTN4O43707 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.6■□□□□ 0.57
ACTN4O43707 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
ACTN4O43707 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.6■□□□□ 0.57
ACTN4O43707 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 IGLL3P-201ENST00000412472 434 ntBASIC18.6■□□□□ 0.57
ACTN4O43707 AC098831.1-202ENST00000438821 336 ntBASIC18.6■□□□□ 0.57
ACTN4O43707 FAAHP1-202ENST00000446499 1238 ntBASIC18.6■□□□□ 0.57
ACTN4O43707 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 AC108751.1-201ENST00000490852 363 ntBASIC18.6■□□□□ 0.57
ACTN4O43707 CXCL1P1-201ENST00000502804 216 ntBASIC18.6■□□□□ 0.57
ACTN4O43707 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.6■□□□□ 0.57
ACTN4O43707 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.6■□□□□ 0.57
ACTN4O43707 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.6■□□□□ 0.57
ACTN4O43707 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
ACTN4O43707 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.6■□□□□ 0.57
ACTN4O43707 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
ACTN4O43707 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.6■□□□□ 0.57
ACTN4O43707 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.6■□□□□ 0.57
ACTN4O43707 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.6■□□□□ 0.57
ACTN4O43707 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ACTN4O43707 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ACTN4O43707 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ACTN4O43707 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ACTN4O43707 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
ACTN4O43707 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
ACTN4O43707 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ACTN4O43707 RNU1-129P-201ENST00000384064 167 ntBASIC18.59■□□□□ 0.57
ACTN4O43707 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ACTN4O43707 AL160237.2-201ENST00000556165 472 ntBASIC18.59■□□□□ 0.57
ACTN4O43707 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.59■□□□□ 0.57
ACTN4O43707 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.59■□□□□ 0.57
ACTN4O43707 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ACTN4O43707 U1.21-201ENST00000580816 167 ntBASIC18.59■□□□□ 0.57
ACTN4O43707 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ACTN4O43707 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.59■□□□□ 0.57
ACTN4O43707 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.59■□□□□ 0.57
ACTN4O43707 AC020765.3-201ENST00000613051 740 ntBASIC18.59■□□□□ 0.57
ACTN4O43707 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.59■□□□□ 0.57
ACTN4O43707 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ACTN4O43707 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.59■□□□□ 0.57
ACTN4O43707 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ACTN4O43707 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ACTN4O43707 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.59■□□□□ 0.57
ACTN4O43707 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
ACTN4O43707 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ACTN4O43707 AC132872.4-202ENST00000622924 2756 ntBASIC18.59■□□□□ 0.57
ACTN4O43707 AL162727.3-201ENST00000635661 2787 ntBASIC18.59■□□□□ 0.57
ACTN4O43707 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
ACTN4O43707 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ACTN4O43707 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
ACTN4O43707 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ACTN4O43707 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
ACTN4O43707 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
ACTN4O43707 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms