Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 BOLA2P3-201ENST00000404566 256 ntBASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 PRYP6-201ENST00000514804 343 ntBASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 AL645728.1-201ENST00000366221 2101 ntBASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 EML3-217ENST00000531557 2509 ntTSL 5 BASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 TUBB8P12-201ENST00000308911 1335 ntBASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 TUBB7P-202ENST00000428444 1305 ntBASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 TUBB8P7-204ENST00000567960 1332 ntBASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 AC073439.1-201ENST00000624121 1774 ntBASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 SPDYE18-201ENST00000510091 1050 ntBASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SHROOM4Q9ULL8 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 AC114501.2-201ENST00000439631 535 ntBASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 KRT18P34-201ENST00000488218 1270 ntBASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 AC068587.10-201ENST00000641210 219 ntBASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC31.22■■■□□ 2.59
SHROOM4Q9ULL8 ANKRD19P-201ENST00000338192 862 ntBASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 AC012313.1-201ENST00000593393 3059 ntBASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC31.21■■■□□ 2.59
SHROOM4Q9ULL8 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
SHROOM4Q9ULL8 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
SHROOM4Q9ULL8 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
SHROOM4Q9ULL8 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.58
SHROOM4Q9ULL8 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.58
SHROOM4Q9ULL8 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC31.2■■■□□ 2.58
SHROOM4Q9ULL8 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC31.2■■■□□ 2.58
SHROOM4Q9ULL8 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
SHROOM4Q9ULL8 AC013467.2-201ENST00000605472 835 ntBASIC31.2■■■□□ 2.58
SHROOM4Q9ULL8 AC133552.6-201ENST00000613406 534 ntBASIC31.2■■■□□ 2.58
SHROOM4Q9ULL8 KRT8P44-201ENST00000441609 1350 ntBASIC31.2■■■□□ 2.58
SHROOM4Q9ULL8 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.58
SHROOM4Q9ULL8 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
SHROOM4Q9ULL8 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 AL512361.1-201ENST00000554200 418 ntBASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 AL589739.1-201ENST00000607720 493 ntBASIC31.19■■■□□ 2.58
SHROOM4Q9ULL8 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC31.19■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms