Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMA1Q9UHB6 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.16■□□□□ 0.5
LIMA1Q9UHB6 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMA1Q9UHB6 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
LIMA1Q9UHB6 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIMA1Q9UHB6 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMA1Q9UHB6 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIMA1Q9UHB6 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
LIMA1Q9UHB6 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.16■□□□□ 0.5
LIMA1Q9UHB6 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMA1Q9UHB6 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 AC069224.1-201ENST00000566372 1715 ntBASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 HCG4P8-203ENST00000443049 980 ntBASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 AC008667.4-201ENST00000607370 168 ntBASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LIMA1Q9UHB6 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LIMA1Q9UHB6 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LIMA1Q9UHB6 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.5
LIMA1Q9UHB6 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.14■□□□□ 0.5
LIMA1Q9UHB6 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
LIMA1Q9UHB6 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 AC092384.3-202ENST00000564646 2873 ntBASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
LIMA1Q9UHB6 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 AL592424.1-201ENST00000563624 1536 ntBASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 AC136632.2-201ENST00000512891 861 ntBASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 IGHV3-65-201ENST00000523210 341 ntBASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LIMA1Q9UHB6 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms