Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 TFAMP1-201ENST00000412727 736 ntBASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CLIP2Q9UDT6 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 AL139400.1-201ENST00000366220 510 ntBASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 SPDYE11-202ENST00000450699 704 ntBASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 AC243562.1-201ENST00000560672 389 ntBASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 SPDYE9P-201ENST00000570642 692 ntBASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 MIR4492-201ENST00000581627 80 ntBASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 SPDYE10P-202ENST00000612005 668 ntBASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 SPDYE8P-202ENST00000612377 668 ntBASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 AL161645.1-201ENST00000622716 1255 ntBASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 AP001350.2-201ENST00000625104 1094 ntBASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP2Q9UDT6 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 RNU1-129P-201ENST00000384064 167 ntBASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 RARRES2P8-201ENST00000566335 367 ntBASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 U1.21-201ENST00000580816 167 ntBASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP2Q9UDT6 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms