Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TM9SF3Q9HD45 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 RN7SL204P-201ENST00000582831 262 ntBASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 AL158211.3-201ENST00000607385 239 ntBASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 AC016027.1-202ENST00000607927 1699 ntBASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TM9SF3Q9HD45 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 MIR346-201ENST00000362234 95 ntBASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 MIR661-201ENST00000384842 89 ntBASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 AC069120.2-201ENST00000524091 540 ntBASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 AF228730.6-201ENST00000641497 218 ntBASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 AC084121.3-201ENST00000641716 218 ntBASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 AC105233.6-201ENST00000642093 218 ntBASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TM9SF3Q9HD45 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 AC131009.4-201ENST00000624048 1740 ntBASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 AC093525.9-201ENST00000624961 1746 ntBASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TM9SF3Q9HD45 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms