Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 AC132938.5-201ENST00000624980 1813 ntBASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 AC011467.2-201ENST00000598425 242 ntBASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 KRT18P1-202ENST00000452408 1331 ntBASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CHMP1AQ9HD42 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 AC096582.2-201ENST00000510860 516 ntBASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 Z69720.1-201ENST00000601483 472 ntBASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 TP73-AS1-210ENST00000637775 1455 ntBASIC14.38□□□□□ -0.11
CHMP1AQ9HD42 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CHMP1AQ9HD42 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms