Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LIMD2Q9BT23 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
LIMD2Q9BT23 LINC02012-201ENST00000608206 1725 ntBASIC9.98□□□□□ -0.81
LIMD2Q9BT23 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LIMD2Q9BT23 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
LIMD2Q9BT23 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
LIMD2Q9BT23 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC9.98□□□□□ -0.81
LIMD2Q9BT23 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC9.98□□□□□ -0.81
LIMD2Q9BT23 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.81
LIMD2Q9BT23 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
LIMD2Q9BT23 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
LIMD2Q9BT23 TET3-201ENST00000305799 5174 ntTSL 5 BASIC9.98□□□□□ -0.81
LIMD2Q9BT23 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
LIMD2Q9BT23 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
LIMD2Q9BT23 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 INTS4P1-201ENST00000438455 1935 ntBASIC9.97□□□□□ -0.81
LIMD2Q9BT23 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 SOD2-201ENST00000337404 991 ntTSL 2 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 FUOM-202ENST00000368551 628 ntTSL 3 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 ACTG1P4-201ENST00000425123 1122 ntBASIC9.97□□□□□ -0.81
LIMD2Q9BT23 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 KRT16P4-201ENST00000453883 522 ntBASIC9.97□□□□□ -0.81
LIMD2Q9BT23 KRT18P35-201ENST00000510488 1269 ntBASIC9.97□□□□□ -0.81
LIMD2Q9BT23 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 AD001527.2-201ENST00000622994 785 ntBASIC9.97□□□□□ -0.81
LIMD2Q9BT23 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC9.97□□□□□ -0.81
LIMD2Q9BT23 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 GPR89P-201ENST00000407924 1495 ntBASIC9.97□□□□□ -0.81
LIMD2Q9BT23 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LIMD2Q9BT23 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 FAM45BP-202ENST00000592932 1624 ntBASIC9.96□□□□□ -0.81
LIMD2Q9BT23 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC9.96□□□□□ -0.81
LIMD2Q9BT23 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms