Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC19.41■□□□□ 0.7
NUP88Q99567 AC060834.1-201ENST00000443027 2032 ntBASIC19.41■□□□□ 0.7
NUP88Q99567 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.41■□□□□ 0.7
NUP88Q99567 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 RPL30-202ENST00000396070 440 ntTSL 2 BASIC19.41■□□□□ 0.7
NUP88Q99567 SPDYE14P-201ENST00000442619 822 ntBASIC19.41■□□□□ 0.7
NUP88Q99567 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.41■□□□□ 0.7
NUP88Q99567 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
NUP88Q99567 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
NUP88Q99567 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
NUP88Q99567 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
NUP88Q99567 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC19.41■□□□□ 0.7
NUP88Q99567 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NUP88Q99567 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.4■□□□□ 0.7
NUP88Q99567 AC008677.1-201ENST00000519230 1561 ntBASIC19.4■□□□□ 0.7
NUP88Q99567 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.4■□□□□ 0.7
NUP88Q99567 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
NUP88Q99567 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC19.4■□□□□ 0.7
NUP88Q99567 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC19.4■□□□□ 0.7
NUP88Q99567 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
NUP88Q99567 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.4■□□□□ 0.7
NUP88Q99567 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
NUP88Q99567 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.4■□□□□ 0.7
NUP88Q99567 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC19.4■□□□□ 0.7
NUP88Q99567 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.4■□□□□ 0.7
NUP88Q99567 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
NUP88Q99567 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC19.4■□□□□ 0.7
NUP88Q99567 KRT8P23-201ENST00000560090 1207 ntBASIC19.4■□□□□ 0.7
NUP88Q99567 AP000842.3-202ENST00000569238 1080 ntBASIC19.4■□□□□ 0.7
NUP88Q99567 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.4■□□□□ 0.7
NUP88Q99567 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC19.4■□□□□ 0.7
NUP88Q99567 AP001059.3-201ENST00000619053 235 ntBASIC19.4■□□□□ 0.7
NUP88Q99567 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.4■□□□□ 0.7
NUP88Q99567 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.4■□□□□ 0.7
NUP88Q99567 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.4■□□□□ 0.7
NUP88Q99567 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
NUP88Q99567 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.4■□□□□ 0.7
NUP88Q99567 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
NUP88Q99567 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC19.39■□□□□ 0.7
NUP88Q99567 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
NUP88Q99567 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
NUP88Q99567 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.39■□□□□ 0.7
NUP88Q99567 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
NUP88Q99567 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
NUP88Q99567 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.39■□□□□ 0.69
NUP88Q99567 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.39■□□□□ 0.69
NUP88Q99567 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.39■□□□□ 0.69
NUP88Q99567 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC19.39■□□□□ 0.69
NUP88Q99567 AC069262.1-201ENST00000539058 672 ntBASIC19.39■□□□□ 0.69
NUP88Q99567 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.39■□□□□ 0.69
NUP88Q99567 SPCS2P1-201ENST00000561636 679 ntBASIC19.39■□□□□ 0.69
NUP88Q99567 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NUP88Q99567 AC008267.7-201ENST00000624570 1194 ntBASIC19.39■□□□□ 0.69
NUP88Q99567 AC084121.4-201ENST00000641598 221 ntBASIC19.39■□□□□ 0.69
NUP88Q99567 AF228730.8-201ENST00000642140 221 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms