Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 AC106795.1-205ENST00000512851 1056 ntBASIC17.97■□□□□ 0.47
CCDC42Q96M95 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 AC069148.1-201ENST00000608741 768 ntBASIC17.97■□□□□ 0.47
CCDC42Q96M95 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 AC092119.3-201ENST00000612618 583 ntBASIC17.97■□□□□ 0.47
CCDC42Q96M95 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 AC010491.1-201ENST00000563101 2797 ntBASIC17.97■□□□□ 0.47
CCDC42Q96M95 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.97■□□□□ 0.47
CCDC42Q96M95 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC42Q96M95 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 AL596257.1-201ENST00000641463 2694 ntBASIC17.96■□□□□ 0.47
CCDC42Q96M95 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.96■□□□□ 0.47
CCDC42Q96M95 AC138894.3-201ENST00000603787 634 ntBASIC17.96■□□□□ 0.47
CCDC42Q96M95 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC42Q96M95 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.96■□□□□ 0.46
CCDC42Q96M95 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.46
CCDC42Q96M95 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.96■□□□□ 0.46
CCDC42Q96M95 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 AC011270.2-201ENST00000624293 2550 ntBASIC17.95■□□□□ 0.46
CCDC42Q96M95 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.95■□□□□ 0.46
CCDC42Q96M95 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 AL139288.1-201ENST00000623748 933 ntBASIC17.95■□□□□ 0.46
CCDC42Q96M95 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 AL356309.3-201ENST00000624132 1934 ntBASIC17.95■□□□□ 0.46
CCDC42Q96M95 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC42Q96M95 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CCDC42Q96M95 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms