Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 AC091812.2-201ENST00000619081 385 ntBASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 AC006277.1-201ENST00000624348 1610 ntBASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 AC068418.2-201ENST00000577309 3703 ntBASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 RNF216P1-203ENST00000404404 2427 ntBASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.82■□□□□ 0.76
CHMP4CQ96CF2 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 C20orf181-201ENST00000623918 480 ntBASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 STK24-203ENST00000397517 4578 ntTSL 2 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
CHMP4CQ96CF2 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 AP001160.2-201ENST00000596071 487 ntBASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC19.8■□□□□ 0.76
CHMP4CQ96CF2 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms