Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 AC004832.2-201ENST00000426397 482 ntBASIC20.04■□□□□ 0.8
VPS53Q5VIR6 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 AP002472.1-201ENST00000577490 586 ntBASIC20.04■□□□□ 0.8
VPS53Q5VIR6 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 AC079328.2-201ENST00000561241 3354 ntBASIC20.04■□□□□ 0.8
VPS53Q5VIR6 WT1-209ENST00000530998 2421 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 AC006538.1-201ENST00000567905 1585 ntBASIC20.04■□□□□ 0.8
VPS53Q5VIR6 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS53Q5VIR6 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 RNU1-129P-201ENST00000384064 167 ntBASIC20.03■□□□□ 0.8
VPS53Q5VIR6 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 AC002347.1-201ENST00000569543 541 ntBASIC20.03■□□□□ 0.8
VPS53Q5VIR6 U1.21-201ENST00000580816 167 ntBASIC20.03■□□□□ 0.8
VPS53Q5VIR6 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 AL139011.1-202ENST00000642063 584 ntBASIC20.03■□□□□ 0.8
VPS53Q5VIR6 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 SLC9A3P2-201ENST00000447821 2021 ntBASIC20.03■□□□□ 0.8
VPS53Q5VIR6 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS53Q5VIR6 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS53Q5VIR6 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC20.02■□□□□ 0.8
VPS53Q5VIR6 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS53Q5VIR6 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS53Q5VIR6 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC20.02■□□□□ 0.8
VPS53Q5VIR6 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS53Q5VIR6 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS53Q5VIR6 MCCD1P2-201ENST00000423228 335 ntBASIC20.02■□□□□ 0.8
VPS53Q5VIR6 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC20.02■□□□□ 0.8
VPS53Q5VIR6 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.02■□□□□ 0.8
VPS53Q5VIR6 ALG1L5P-201ENST00000482043 771 ntBASIC20.02■□□□□ 0.8
VPS53Q5VIR6 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.02■□□□□ 0.8
VPS53Q5VIR6 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS53Q5VIR6 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
VPS53Q5VIR6 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
VPS53Q5VIR6 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC20.02■□□□□ 0.79
VPS53Q5VIR6 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
VPS53Q5VIR6 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
VPS53Q5VIR6 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.79
VPS53Q5VIR6 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC20.02■□□□□ 0.79
VPS53Q5VIR6 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
VPS53Q5VIR6 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 MTRF1LP2-201ENST00000506027 1122 ntBASIC20.01■□□□□ 0.79
VPS53Q5VIR6 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 CD7-202ENST00000578509 925 ntTSL 3 BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 SIGLEC29P-201ENST00000599873 1114 ntBASIC20.01■□□□□ 0.79
VPS53Q5VIR6 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms