Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CCNA1P78396 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.76■□□□□ 0.59
CCNA1P78396 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCNA1P78396 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.76■□□□□ 0.59
CCNA1P78396 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 AL589702.1-201ENST00000641229 1509 ntBASIC18.75■□□□□ 0.59
CCNA1P78396 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CCNA1P78396 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CCNA1P78396 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC18.75■□□□□ 0.59
CCNA1P78396 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CCNA1P78396 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.75■□□□□ 0.59
CCNA1P78396 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
CCNA1P78396 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CCNA1P78396 SDHAP3-202ENST00000515467 728 ntBASIC18.75■□□□□ 0.59
CCNA1P78396 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
CCNA1P78396 AC055876.2-201ENST00000531834 546 ntBASIC18.75■□□□□ 0.59
CCNA1P78396 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.75■□□□□ 0.59
CCNA1P78396 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.75■□□□□ 0.59
CCNA1P78396 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.75■□□□□ 0.59
CCNA1P78396 AC008494.3-201ENST00000606615 944 ntBASIC18.75■□□□□ 0.59
CCNA1P78396 TEX48-202ENST00000612244 662 ntTSL 3 BASIC18.75■□□□□ 0.59
CCNA1P78396 IGHV3-72-202ENST00000621503 303 ntBASIC18.75■□□□□ 0.59
CCNA1P78396 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.75■□□□□ 0.59
CCNA1P78396 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CCNA1P78396 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.75■□□□□ 0.59
CCNA1P78396 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCNA1P78396 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.74■□□□□ 0.59
CCNA1P78396 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.74■□□□□ 0.59
CCNA1P78396 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
CCNA1P78396 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.74■□□□□ 0.59
CCNA1P78396 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CCNA1P78396 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.74■□□□□ 0.59
CCNA1P78396 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.74■□□□□ 0.59
CCNA1P78396 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CCNA1P78396 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 SLC7A15P-201ENST00000424028 1363 ntBASIC18.74■□□□□ 0.59
CCNA1P78396 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CCNA1P78396 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 SPDYE17-201ENST00000412399 783 ntBASIC18.74■□□□□ 0.59
CCNA1P78396 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.74■□□□□ 0.59
CCNA1P78396 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.74■□□□□ 0.59
CCNA1P78396 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC18.74■□□□□ 0.59
CCNA1P78396 AC061975.2-201ENST00000581722 295 ntBASIC18.74■□□□□ 0.59
CCNA1P78396 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.74■□□□□ 0.59
CCNA1P78396 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.74■□□□□ 0.59
CCNA1P78396 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CCNA1P78396 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.74■□□□□ 0.59
CCNA1P78396 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.74■□□□□ 0.59
CCNA1P78396 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.74■□□□□ 0.59
CCNA1P78396 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CCNA1P78396 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 AL023806.1-201ENST00000603994 1649 ntBASIC18.74■□□□□ 0.59
CCNA1P78396 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CCNA1P78396 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.74■□□□□ 0.59
CCNA1P78396 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.74■□□□□ 0.59
CCNA1P78396 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CCNA1P78396 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCNA1P78396 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCNA1P78396 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CCNA1P78396 AL391256.1-201ENST00000443260 1855 ntBASIC18.73■□□□□ 0.59
CCNA1P78396 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms