Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
RHBDL3P58872 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.45■□□□□ 0.7
RHBDL3P58872 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC19.45■□□□□ 0.7
RHBDL3P58872 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
RHBDL3P58872 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
RHBDL3P58872 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
RHBDL3P58872 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.45■□□□□ 0.7
RHBDL3P58872 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 LETM1P2-201ENST00000597330 2178 ntBASIC19.45■□□□□ 0.7
RHBDL3P58872 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.45■□□□□ 0.7
RHBDL3P58872 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC19.45■□□□□ 0.7
RHBDL3P58872 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
RHBDL3P58872 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC19.45■□□□□ 0.7
RHBDL3P58872 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC19.45■□□□□ 0.7
RHBDL3P58872 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.45■□□□□ 0.7
RHBDL3P58872 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
RHBDL3P58872 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.45■□□□□ 0.7
RHBDL3P58872 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 AC005622.1-201ENST00000636801 1703 ntBASIC19.45■□□□□ 0.7
RHBDL3P58872 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RHBDL3P58872 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.44■□□□□ 0.7
RHBDL3P58872 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
RHBDL3P58872 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
RHBDL3P58872 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
RHBDL3P58872 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
RHBDL3P58872 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 AC005034.1-201ENST00000426657 489 ntBASIC19.44■□□□□ 0.7
RHBDL3P58872 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC19.44■□□□□ 0.7
RHBDL3P58872 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
RHBDL3P58872 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC19.44■□□□□ 0.7
RHBDL3P58872 AC025048.6-201ENST00000634326 1161 ntBASIC19.44■□□□□ 0.7
RHBDL3P58872 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.44■□□□□ 0.7
RHBDL3P58872 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 LINC01144-201ENST00000626198 1710 ntBASIC19.44■□□□□ 0.7
RHBDL3P58872 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
RHBDL3P58872 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
RHBDL3P58872 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
RHBDL3P58872 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.44■□□□□ 0.7
RHBDL3P58872 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RHBDL3P58872 KRT8P12-202ENST00000472924 1397 ntBASIC19.44■□□□□ 0.7
RHBDL3P58872 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 AC012313.1-201ENST00000593393 3059 ntBASIC19.43■□□□□ 0.7
RHBDL3P58872 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.43■□□□□ 0.7
RHBDL3P58872 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.43■□□□□ 0.7
RHBDL3P58872 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
RHBDL3P58872 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
RHBDL3P58872 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC19.43■□□□□ 0.7
RHBDL3P58872 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC19.43■□□□□ 0.7
RHBDL3P58872 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC19.43■□□□□ 0.7
RHBDL3P58872 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC19.43■□□□□ 0.7
RHBDL3P58872 RNA5-8SN1-201ENST00000610460 153 ntBASIC19.43■□□□□ 0.7
RHBDL3P58872 RNA5-8SN5-202ENST00000612463 153 ntBASIC19.43■□□□□ 0.7
RHBDL3P58872 RNA5-8SN4-201ENST00000613359 153 ntBASIC19.43■□□□□ 0.7
RHBDL3P58872 RNA5-8SN5-201ENST00000619471 153 ntBASIC19.43■□□□□ 0.7
RHBDL3P58872 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.43■□□□□ 0.7
RHBDL3P58872 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 UBALD1-205ENST00000590891 2641 ntBASIC19.43■□□□□ 0.7
RHBDL3P58872 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC19.43■□□□□ 0.7
RHBDL3P58872 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RHBDL3P58872 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
RHBDL3P58872 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms