Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TCAF2P1-201ENST00000291129 2421 ntBASIC17.56■□□□□ 0.4
LIG3P49916 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
LIG3P49916 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.56■□□□□ 0.4
LIG3P49916 BX005266.1-201ENST00000473402 457 ntBASIC17.56■□□□□ 0.4
LIG3P49916 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 RNA5SP419-201ENST00000515908 135 ntBASIC17.56■□□□□ 0.4
LIG3P49916 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.56■□□□□ 0.4
LIG3P49916 AP001005.1-201ENST00000571755 1248 ntBASIC17.56■□□□□ 0.4
LIG3P49916 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.56■□□□□ 0.4
LIG3P49916 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.56■□□□□ 0.4
LIG3P49916 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.56■□□□□ 0.4
LIG3P49916 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.56■□□□□ 0.4
LIG3P49916 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.56■□□□□ 0.4
LIG3P49916 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.56■□□□□ 0.4
LIG3P49916 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
LIG3P49916 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.55■□□□□ 0.4
LIG3P49916 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.55■□□□□ 0.4
LIG3P49916 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.55■□□□□ 0.4
LIG3P49916 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
LIG3P49916 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LIG3P49916 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LIG3P49916 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 SPDYE21P-201ENST00000413323 827 ntBASIC17.55■□□□□ 0.4
LIG3P49916 AL031284.1-201ENST00000419297 478 ntBASIC17.55■□□□□ 0.4
LIG3P49916 HNRNPDP1-201ENST00000439535 754 ntBASIC17.55■□□□□ 0.4
LIG3P49916 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LIG3P49916 IGHV3-52-201ENST00000519770 353 ntBASIC17.55■□□□□ 0.4
LIG3P49916 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.55■□□□□ 0.4
LIG3P49916 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.55■□□□□ 0.4
LIG3P49916 AC073592.4-201ENST00000623827 446 ntBASIC17.55■□□□□ 0.4
LIG3P49916 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LIG3P49916 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.55■□□□□ 0.4
LIG3P49916 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.55■□□□□ 0.4
LIG3P49916 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG3P49916 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 AC063926.3-201ENST00000624734 5658 ntBASIC17.54■□□□□ 0.4
LIG3P49916 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.54■□□□□ 0.4
LIG3P49916 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.54■□□□□ 0.4
LIG3P49916 AC004817.3-201ENST00000602957 2129 ntBASIC17.54■□□□□ 0.4
LIG3P49916 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.54■□□□□ 0.4
LIG3P49916 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
LIG3P49916 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
LIG3P49916 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.54■□□□□ 0.4
LIG3P49916 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LIG3P49916 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LIG3P49916 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
LIG3P49916 RPS2P1-201ENST00000434010 821 ntBASIC17.54■□□□□ 0.4
LIG3P49916 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.54■□□□□ 0.4
LIG3P49916 MTDHP4-201ENST00000600287 670 ntBASIC17.54■□□□□ 0.4
LIG3P49916 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.54■□□□□ 0.4
LIG3P49916 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.54■□□□□ 0.4
LIG3P49916 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.54■□□□□ 0.4
LIG3P49916 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIG3P49916 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms