Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
HOXA1P49639 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXA1P49639 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 AC117947.1-201ENST00000427448 529 ntBASIC13.87□□□□□ -0.19
HOXA1P49639 AC007967.3-201ENST00000434308 558 ntBASIC13.87□□□□□ -0.19
HOXA1P49639 AC112907.2-201ENST00000448639 330 ntBASIC13.87□□□□□ -0.19
HOXA1P49639 GUSBP12-201ENST00000513727 720 ntBASIC13.87□□□□□ -0.19
HOXA1P49639 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
HOXA1P49639 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC13.87□□□□□ -0.19
HOXA1P49639 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXA1P49639 AC124947.2-201ENST00000547118 1133 ntBASIC13.87□□□□□ -0.19
HOXA1P49639 AC019129.2-201ENST00000609837 1235 ntBASIC13.87□□□□□ -0.19
HOXA1P49639 AC133561.5-201ENST00000635547 218 ntBASIC13.87□□□□□ -0.19
HOXA1P49639 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
HOXA1P49639 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.87□□□□□ -0.19
HOXA1P49639 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXA1P49639 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXA1P49639 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC13.87□□□□□ -0.19
HOXA1P49639 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXA1P49639 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC13.87□□□□□ -0.19
HOXA1P49639 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HOXA1P49639 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXA1P49639 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC13.87□□□□□ -0.19
HOXA1P49639 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
HOXA1P49639 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
HOXA1P49639 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
HOXA1P49639 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
HOXA1P49639 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
HOXA1P49639 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
HOXA1P49639 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
HOXA1P49639 AC079781.5-202ENST00000641784 3743 ntBASIC13.86□□□□□ -0.19
HOXA1P49639 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
HOXA1P49639 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
HOXA1P49639 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
HOXA1P49639 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.86□□□□□ -0.19
HOXA1P49639 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 TERF1P1-201ENST00000311003 1181 ntBASIC13.86□□□□□ -0.19
HOXA1P49639 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
HOXA1P49639 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC13.86□□□□□ -0.19
HOXA1P49639 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
HOXA1P49639 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC13.86□□□□□ -0.19
HOXA1P49639 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 EGFEM1P-202ENST00000431685 1563 ntBASIC13.86□□□□□ -0.19
HOXA1P49639 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC13.86□□□□□ -0.19
HOXA1P49639 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.86□□□□□ -0.19
HOXA1P49639 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC13.86□□□□□ -0.19
HOXA1P49639 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.86□□□□□ -0.19
HOXA1P49639 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
HOXA1P49639 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
HOXA1P49639 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HOXA1P49639 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.85□□□□□ -0.19
HOXA1P49639 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms