Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.56■□□□□ 0.24
MSH3P20585 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
MSH3P20585 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
MSH3P20585 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.56■□□□□ 0.24
MSH3P20585 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.56■□□□□ 0.24
MSH3P20585 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.56■□□□□ 0.24
MSH3P20585 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.56■□□□□ 0.24
MSH3P20585 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 AC068137.2-201ENST00000605408 478 ntBASIC16.56■□□□□ 0.24
MSH3P20585 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.56■□□□□ 0.24
MSH3P20585 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.56■□□□□ 0.24
MSH3P20585 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
MSH3P20585 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.56■□□□□ 0.24
MSH3P20585 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
MSH3P20585 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
MSH3P20585 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH3P20585 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.56■□□□□ 0.24
MSH3P20585 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.55■□□□□ 0.24
MSH3P20585 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 KRT8P39-201ENST00000396270 1433 ntBASIC16.55■□□□□ 0.24
MSH3P20585 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MSH3P20585 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
MSH3P20585 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
MSH3P20585 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
MSH3P20585 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
MSH3P20585 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.55■□□□□ 0.24
MSH3P20585 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.55■□□□□ 0.24
MSH3P20585 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.55■□□□□ 0.24
MSH3P20585 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
MSH3P20585 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.55■□□□□ 0.24
MSH3P20585 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.55■□□□□ 0.24
MSH3P20585 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.55■□□□□ 0.24
MSH3P20585 AL031055.1-201ENST00000606362 631 ntBASIC16.55■□□□□ 0.24
MSH3P20585 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.55■□□□□ 0.24
MSH3P20585 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.55■□□□□ 0.24
MSH3P20585 UBALD1-205ENST00000590891 2641 ntBASIC16.55■□□□□ 0.24
MSH3P20585 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH3P20585 AL671710.1-201ENST00000610245 2349 ntBASIC16.54■□□□□ 0.24
MSH3P20585 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
MSH3P20585 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
MSH3P20585 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.54■□□□□ 0.24
MSH3P20585 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.54■□□□□ 0.24
MSH3P20585 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.54■□□□□ 0.24
MSH3P20585 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
MSH3P20585 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.54■□□□□ 0.24
MSH3P20585 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 AC004832.2-201ENST00000426397 482 ntBASIC16.54■□□□□ 0.24
MSH3P20585 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.54■□□□□ 0.24
MSH3P20585 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.54■□□□□ 0.24
MSH3P20585 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
MSH3P20585 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.54■□□□□ 0.24
MSH3P20585 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.54■□□□□ 0.24
MSH3P20585 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
MSH3P20585 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
MSH3P20585 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.54■□□□□ 0.24
MSH3P20585 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms