Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.58■□□□□ 0.72
HMGB1P09429 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.58■□□□□ 0.72
HMGB1P09429 AC092474.2-201ENST00000424288 719 ntBASIC19.58■□□□□ 0.72
HMGB1P09429 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.58■□□□□ 0.72
HMGB1P09429 AC007967.2-201ENST00000432613 625 ntBASIC19.58■□□□□ 0.72
HMGB1P09429 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.58■□□□□ 0.72
HMGB1P09429 KRT18P2-201ENST00000447938 1258 ntBASIC19.58■□□□□ 0.72
HMGB1P09429 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HMGB1P09429 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.58■□□□□ 0.72
HMGB1P09429 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.58■□□□□ 0.72
HMGB1P09429 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.58■□□□□ 0.72
HMGB1P09429 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.58■□□□□ 0.72
HMGB1P09429 AC120114.3-201ENST00000611923 658 ntBASIC19.58■□□□□ 0.72
HMGB1P09429 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.58■□□□□ 0.72
HMGB1P09429 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HMGB1P09429 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.58■□□□□ 0.72
HMGB1P09429 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGB1P09429 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.58■□□□□ 0.72
HMGB1P09429 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGB1P09429 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.58■□□□□ 0.72
HMGB1P09429 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGB1P09429 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGB1P09429 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HMGB1P09429 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGB1P09429 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
HMGB1P09429 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
HMGB1P09429 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
HMGB1P09429 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGB1P09429 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
HMGB1P09429 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
HMGB1P09429 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.57■□□□□ 0.72
HMGB1P09429 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 RNA5SP416-201ENST00000516838 111 ntBASIC19.57■□□□□ 0.72
HMGB1P09429 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGB1P09429 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
HMGB1P09429 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.57■□□□□ 0.72
HMGB1P09429 AC027601.4-201ENST00000611259 610 ntBASIC19.57■□□□□ 0.72
HMGB1P09429 FAM197Y3-203ENST00000618346 717 ntBASIC19.57■□□□□ 0.72
HMGB1P09429 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.57■□□□□ 0.72
HMGB1P09429 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
HMGB1P09429 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGB1P09429 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 AL513523.2-202ENST00000427283 2040 ntBASIC19.57■□□□□ 0.72
HMGB1P09429 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.57■□□□□ 0.72
HMGB1P09429 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC19.57■□□□□ 0.72
HMGB1P09429 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGB1P09429 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
HMGB1P09429 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB1P09429 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGB1P09429 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGB1P09429 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.56■□□□□ 0.72
HMGB1P09429 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC19.56■□□□□ 0.72
HMGB1P09429 CROCCP1-201ENST00000426910 5675 ntBASIC19.56■□□□□ 0.72
HMGB1P09429 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGB1P09429 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.56■□□□□ 0.72
HMGB1P09429 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
HMGB1P09429 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGB1P09429 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGB1P09429 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGB1P09429 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGB1P09429 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGB1P09429 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGB1P09429 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.56■□□□□ 0.72
HMGB1P09429 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.56■□□□□ 0.72
HMGB1P09429 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGB1P09429 AC018845.2-201ENST00000568326 409 ntBASIC19.56■□□□□ 0.72
HMGB1P09429 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
HMGB1P09429 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
HMGB1P09429 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGB1P09429 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.56■□□□□ 0.72
HMGB1P09429 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGB1P09429 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
HMGB1P09429 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
HMGB1P09429 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.56■□□□□ 0.72
HMGB1P09429 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGB1P09429 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
HMGB1P09429 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGB1P09429 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGB1P09429 AC026691.1-201ENST00000602502 2017 ntBASIC19.56■□□□□ 0.72
HMGB1P09429 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGB1P09429 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC19.56■□□□□ 0.72
HMGB1P09429 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB1P09429 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.55■□□□□ 0.72
HMGB1P09429 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB1P09429 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.55■□□□□ 0.72
HMGB1P09429 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms