Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.17■□□□□ 0.18
TNFP01375 AL390754.1-201ENST00000619088 582 ntBASIC16.17■□□□□ 0.18
TNFP01375 FOXO1B-201ENST00000504678 1527 ntBASIC16.17■□□□□ 0.18
TNFP01375 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TNFP01375 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TNFP01375 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TNFP01375 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.17■□□□□ 0.18
TNFP01375 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
TNFP01375 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
TNFP01375 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.16■□□□□ 0.18
TNFP01375 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.16■□□□□ 0.18
TNFP01375 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
TNFP01375 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TNFP01375 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 AL353705.2-201ENST00000428243 662 ntBASIC16.16■□□□□ 0.18
TNFP01375 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.16■□□□□ 0.18
TNFP01375 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 RNA5SP410-201ENST00000516285 106 ntBASIC16.16■□□□□ 0.18
TNFP01375 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.16■□□□□ 0.18
TNFP01375 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.16■□□□□ 0.18
TNFP01375 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.16■□□□□ 0.18
TNFP01375 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.16■□□□□ 0.18
TNFP01375 MIR4745-201ENST00000577608 62 ntBASIC16.16■□□□□ 0.18
TNFP01375 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.16■□□□□ 0.18
TNFP01375 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TNFP01375 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TNFP01375 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.16■□□□□ 0.18
TNFP01375 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC16.16■□□□□ 0.18
TNFP01375 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.16■□□□□ 0.18
TNFP01375 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.16■□□□□ 0.18
TNFP01375 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.16■□□□□ 0.18
TNFP01375 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TNFP01375 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TNFP01375 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.15■□□□□ 0.18
TNFP01375 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.15■□□□□ 0.18
TNFP01375 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.15■□□□□ 0.18
TNFP01375 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
TNFP01375 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
TNFP01375 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.15■□□□□ 0.18
TNFP01375 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 AC027369.6-201ENST00000525520 931 ntBASIC16.15■□□□□ 0.18
TNFP01375 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.15■□□□□ 0.18
TNFP01375 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.15■□□□□ 0.18
TNFP01375 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.15■□□□□ 0.18
TNFP01375 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.15■□□□□ 0.18
TNFP01375 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
TNFP01375 AC007967.4-201ENST00000614700 386 ntBASIC16.15■□□□□ 0.18
TNFP01375 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.15■□□□□ 0.18
TNFP01375 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
TNFP01375 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
TNFP01375 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TNFP01375 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TNFP01375 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
TNFP01375 AC106820.2-201ENST00000563775 3264 ntBASIC16.14■□□□□ 0.18
TNFP01375 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
TNFP01375 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
TNFP01375 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.14■□□□□ 0.17
TNFP01375 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.14■□□□□ 0.17
TNFP01375 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TNFP01375 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.14■□□□□ 0.17
TNFP01375 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms