Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
LMX1BO60663 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.67□□□□□ -0.06
LMX1BO60663 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LMX1BO60663 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
LMX1BO60663 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC14.66□□□□□ -0.06
LMX1BO60663 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
LMX1BO60663 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
LMX1BO60663 AC007950.2-201ENST00000615045 2347 ntBASIC14.66□□□□□ -0.06
LMX1BO60663 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.66□□□□□ -0.06
LMX1BO60663 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.66□□□□□ -0.06
LMX1BO60663 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
LMX1BO60663 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC14.66□□□□□ -0.06
LMX1BO60663 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.66□□□□□ -0.06
LMX1BO60663 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC14.66□□□□□ -0.06
LMX1BO60663 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
LMX1BO60663 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC14.66□□□□□ -0.06
LMX1BO60663 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC14.66□□□□□ -0.06
LMX1BO60663 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.66□□□□□ -0.06
LMX1BO60663 AC027796.2-201ENST00000575326 344 ntBASIC14.66□□□□□ -0.06
LMX1BO60663 MTDHP5-201ENST00000598980 586 ntBASIC14.66□□□□□ -0.06
LMX1BO60663 AC134684.3-201ENST00000641758 218 ntBASIC14.66□□□□□ -0.06
LMX1BO60663 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
LMX1BO60663 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 AL513523.2-202ENST00000427283 2040 ntBASIC14.66□□□□□ -0.06
LMX1BO60663 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.66□□□□□ -0.06
LMX1BO60663 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
LMX1BO60663 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 KRT8P49-201ENST00000604166 1432 ntBASIC14.66□□□□□ -0.06
LMX1BO60663 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LMX1BO60663 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
LMX1BO60663 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
LMX1BO60663 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
LMX1BO60663 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
LMX1BO60663 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
LMX1BO60663 AC006538.1-201ENST00000567905 1585 ntBASIC14.65□□□□□ -0.06
LMX1BO60663 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.65□□□□□ -0.06
LMX1BO60663 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LMX1BO60663 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
LMX1BO60663 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LMX1BO60663 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
LMX1BO60663 COA5-202ENST00000409997 557 ntTSL 4 BASIC14.65□□□□□ -0.06
LMX1BO60663 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.65□□□□□ -0.06
LMX1BO60663 CRCP-205ENST00000431089 942 ntTSL 2 BASIC14.65□□□□□ -0.06
LMX1BO60663 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.65□□□□□ -0.06
LMX1BO60663 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.65□□□□□ -0.06
LMX1BO60663 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC14.65□□□□□ -0.06
LMX1BO60663 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LMX1BO60663 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.65□□□□□ -0.06
LMX1BO60663 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC14.65□□□□□ -0.06
LMX1BO60663 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.65□□□□□ -0.06
LMX1BO60663 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.65□□□□□ -0.06
LMX1BO60663 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC14.65□□□□□ -0.06
LMX1BO60663 PGM5P2-202ENST00000637225 1043 ntBASIC14.65□□□□□ -0.06
LMX1BO60663 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC14.65□□□□□ -0.06
LMX1BO60663 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC14.65□□□□□ -0.06
LMX1BO60663 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LMX1BO60663 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LMX1BO60663 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LMX1BO60663 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.65□□□□□ -0.06
LMX1BO60663 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
LMX1BO60663 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.65□□□□□ -0.06
LMX1BO60663 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.65□□□□□ -0.06
LMX1BO60663 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
LMX1BO60663 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
LMX1BO60663 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
LMX1BO60663 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
LMX1BO60663 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
LMX1BO60663 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.64□□□□□ -0.07
LMX1BO60663 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
LMX1BO60663 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
LMX1BO60663 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LMX1BO60663 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms