Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.78■□□□□ 0.12
UPK1AO00322 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 AC144831.1-201ENST00000573312 2656 ntBASIC15.78■□□□□ 0.12
UPK1AO00322 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.78■□□□□ 0.12
UPK1AO00322 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.78■□□□□ 0.12
UPK1AO00322 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.78■□□□□ 0.12
UPK1AO00322 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 TPM4P1-201ENST00000436100 807 ntBASIC15.78■□□□□ 0.12
UPK1AO00322 HLA-J-202ENST00000469281 1241 ntBASIC15.78■□□□□ 0.12
UPK1AO00322 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.78■□□□□ 0.12
UPK1AO00322 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.78■□□□□ 0.12
UPK1AO00322 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 MIR7706-201ENST00000613747 67 ntBASIC15.78■□□□□ 0.12
UPK1AO00322 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 AC005593.1-201ENST00000624894 515 ntBASIC15.78■□□□□ 0.12
UPK1AO00322 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.78■□□□□ 0.12
UPK1AO00322 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.78■□□□□ 0.12
UPK1AO00322 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UPK1AO00322 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.78■□□□□ 0.12
UPK1AO00322 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
UPK1AO00322 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
UPK1AO00322 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
UPK1AO00322 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.77■□□□□ 0.12
UPK1AO00322 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
UPK1AO00322 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
UPK1AO00322 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.77■□□□□ 0.12
UPK1AO00322 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
UPK1AO00322 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.77■□□□□ 0.12
UPK1AO00322 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
UPK1AO00322 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.77■□□□□ 0.12
UPK1AO00322 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
UPK1AO00322 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC15.77■□□□□ 0.12
UPK1AO00322 RNA5SP419-201ENST00000515908 135 ntBASIC15.77■□□□□ 0.12
UPK1AO00322 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.77■□□□□ 0.12
UPK1AO00322 AC117500.6-201ENST00000624871 588 ntBASIC15.77■□□□□ 0.12
UPK1AO00322 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.12
UPK1AO00322 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.77■□□□□ 0.11
UPK1AO00322 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
UPK1AO00322 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
UPK1AO00322 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.77■□□□□ 0.11
UPK1AO00322 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
UPK1AO00322 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
UPK1AO00322 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
UPK1AO00322 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
UPK1AO00322 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
UPK1AO00322 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
UPK1AO00322 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
UPK1AO00322 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.77■□□□□ 0.11
UPK1AO00322 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
UPK1AO00322 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
UPK1AO00322 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
UPK1AO00322 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.77■□□□□ 0.11
UPK1AO00322 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.77■□□□□ 0.11
UPK1AO00322 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
UPK1AO00322 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
UPK1AO00322 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
UPK1AO00322 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
UPK1AO00322 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
UPK1AO00322 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
UPK1AO00322 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
UPK1AO00322 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
UPK1AO00322 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
UPK1AO00322 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
UPK1AO00322 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
UPK1AO00322 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
UPK1AO00322 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
UPK1AO00322 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
UPK1AO00322 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.76■□□□□ 0.11
UPK1AO00322 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
UPK1AO00322 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC15.76■□□□□ 0.11
UPK1AO00322 AC092910.1-201ENST00000482027 1129 ntBASIC15.76■□□□□ 0.11
UPK1AO00322 AC107918.2-201ENST00000530817 355 ntBASIC15.76■□□□□ 0.11
UPK1AO00322 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.76■□□□□ 0.11
UPK1AO00322 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.76■□□□□ 0.11
UPK1AO00322 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.76■□□□□ 0.11
UPK1AO00322 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
UPK1AO00322 MPDU1-223ENST00000582151 728 ntBASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms