Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
AP3B1O00203 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
AP3B1O00203 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
AP3B1O00203 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
AP3B1O00203 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
AP3B1O00203 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.82■□□□□ 0.28
AP3B1O00203 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
AP3B1O00203 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
AP3B1O00203 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
AP3B1O00203 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
AP3B1O00203 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
AP3B1O00203 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
AP3B1O00203 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
AP3B1O00203 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
AP3B1O00203 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.81■□□□□ 0.28
AP3B1O00203 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.81■□□□□ 0.28
AP3B1O00203 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
AP3B1O00203 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.81■□□□□ 0.28
AP3B1O00203 AP002414.3-201ENST00000589352 1468 ntBASIC16.81■□□□□ 0.28
AP3B1O00203 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
AP3B1O00203 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
AP3B1O00203 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.81■□□□□ 0.28
AP3B1O00203 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
AP3B1O00203 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.81■□□□□ 0.28
AP3B1O00203 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.81■□□□□ 0.28
AP3B1O00203 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.81■□□□□ 0.28
AP3B1O00203 AL773604.1-201ENST00000617417 272 ntBASIC16.81■□□□□ 0.28
AP3B1O00203 FAM215A-202ENST00000632077 792 ntBASIC16.81■□□□□ 0.28
AP3B1O00203 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.81■□□□□ 0.28
AP3B1O00203 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.81■□□□□ 0.28
AP3B1O00203 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.81■□□□□ 0.28
AP3B1O00203 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
AP3B1O00203 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
AP3B1O00203 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
AP3B1O00203 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
AP3B1O00203 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.8■□□□□ 0.28
AP3B1O00203 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.8■□□□□ 0.28
AP3B1O00203 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
AP3B1O00203 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
AP3B1O00203 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.8■□□□□ 0.28
AP3B1O00203 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.8■□□□□ 0.28
AP3B1O00203 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.8■□□□□ 0.28
AP3B1O00203 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
AP3B1O00203 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
AP3B1O00203 PMS2P4-201ENST00000412466 1052 ntBASIC16.8■□□□□ 0.28
AP3B1O00203 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 CXCL1P1-201ENST00000502804 216 ntBASIC16.8■□□□□ 0.28
AP3B1O00203 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.8■□□□□ 0.28
AP3B1O00203 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.8■□□□□ 0.28
AP3B1O00203 AC004790.2-201ENST00000623588 572 ntBASIC16.8■□□□□ 0.28
AP3B1O00203 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.8■□□□□ 0.28
AP3B1O00203 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.8■□□□□ 0.28
AP3B1O00203 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
AP3B1O00203 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.8■□□□□ 0.28
AP3B1O00203 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.8■□□□□ 0.28
AP3B1O00203 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
AP3B1O00203 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
AP3B1O00203 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
AP3B1O00203 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
AP3B1O00203 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP3B1O00203 AC022188.1-201ENST00000620960 1664 ntBASIC16.79■□□□□ 0.28
AP3B1O00203 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP3B1O00203 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
AP3B1O00203 PKD1P5-201ENST00000532415 10291 ntBASIC16.79■□□□□ 0.28
AP3B1O00203 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP3B1O00203 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.79■□□□□ 0.28
AP3B1O00203 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
AP3B1O00203 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.79■□□□□ 0.28
AP3B1O00203 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
AP3B1O00203 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
AP3B1O00203 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.79■□□□□ 0.28
AP3B1O00203 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.79■□□□□ 0.28
AP3B1O00203 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms