Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRIM49D1C9J1S8 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
TRIM49D1C9J1S8 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
TRIM49D1C9J1S8 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 PAWRP1-201ENST00000451083 565 ntBASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 AC132008.2-207ENST00000454517 770 ntBASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 AL139424.1-201ENST00000607572 797 ntBASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 NPAP1P7-201ENST00000613027 823 ntBASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 AL022326.1-202ENST00000641533 845 ntBASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRIM49D1C9J1S8 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 NFIC-211ENST00000641145 8399 ntBASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 KRT18P21-201ENST00000515767 1272 ntBASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 NKAPP1-205ENST00000585790 367 ntBASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRIM49D1C9J1S8 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 REXO1L8P-201ENST00000604378 1897 ntBASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.68■□□□□ 0.26
TRIM49D1C9J1S8 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms