Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 AC006277.1-201ENST00000624348 1610 ntBASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SHROOM4Q9ULL8 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 AL645608.8-201ENST00000606034 2086 ntBASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 AC234783.1-201ENST00000441761 496 ntBASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 AC021097.1-201ENST00000607902 574 ntBASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 PC-204ENST00000524491 1714 ntTSL 2 BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC31.28■■■□□ 2.6
SHROOM4Q9ULL8 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 AL133215.2-201ENST00000609242 977 ntBASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 PCDHB18P-201ENST00000524813 2368 ntBASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC31.27■■■□□ 2.6
SHROOM4Q9ULL8 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
SHROOM4Q9ULL8 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
SHROOM4Q9ULL8 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.6
SHROOM4Q9ULL8 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
SHROOM4Q9ULL8 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
SHROOM4Q9ULL8 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
SHROOM4Q9ULL8 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC31.26■■■□□ 2.6
SHROOM4Q9ULL8 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 HIST1H2BPS3-201ENST00000419683 341 ntBASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SHROOM4Q9ULL8 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 REXO1L6P-201ENST00000603433 1515 ntBASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 CHCHD2P3-201ENST00000603038 451 ntBASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 MIR6787-201ENST00000616675 61 ntBASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
SHROOM4Q9ULL8 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC31.24■■■□□ 2.59
SHROOM4Q9ULL8 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms