Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 AC005622.1-201ENST00000636801 1703 ntBASIC17.81■□□□□ 0.44
SIX2Q9NPC8 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 AC104109.2-201ENST00000602919 1418 ntBASIC17.81■□□□□ 0.44
SIX2Q9NPC8 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SIX2Q9NPC8 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 AC046158.3-201ENST00000624947 2558 ntBASIC17.79■□□□□ 0.44
SIX2Q9NPC8 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 AC018845.2-201ENST00000568326 409 ntBASIC17.79■□□□□ 0.44
SIX2Q9NPC8 AL009183.1-201ENST00000603760 355 ntBASIC17.79■□□□□ 0.44
SIX2Q9NPC8 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 AC010491.1-201ENST00000563101 2797 ntBASIC17.79■□□□□ 0.44
SIX2Q9NPC8 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.79■□□□□ 0.44
SIX2Q9NPC8 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 AC008894.3-201ENST00000624324 3103 ntBASIC17.78■□□□□ 0.44
SIX2Q9NPC8 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 AL592424.1-201ENST00000563624 1536 ntBASIC17.78■□□□□ 0.44
SIX2Q9NPC8 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
SIX2Q9NPC8 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms