Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ABCA3Q99758 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
ABCA3Q99758 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
ABCA3Q99758 AC074338.1-201ENST00000416825 156 ntBASIC21.68■■□□□ 1.06
ABCA3Q99758 PFN1P12-201ENST00000455938 534 ntBASIC21.68■■□□□ 1.06
ABCA3Q99758 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
ABCA3Q99758 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC21.68■■□□□ 1.06
ABCA3Q99758 AC133539.2-201ENST00000604757 467 ntBASIC21.68■■□□□ 1.06
ABCA3Q99758 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC21.68■■□□□ 1.06
ABCA3Q99758 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC21.68■■□□□ 1.06
ABCA3Q99758 RHOXF1P1-202ENST00000635473 501 ntBASIC21.68■■□□□ 1.06
ABCA3Q99758 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC21.68■■□□□ 1.06
ABCA3Q99758 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
ABCA3Q99758 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC21.68■■□□□ 1.06
ABCA3Q99758 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC21.68■■□□□ 1.06
ABCA3Q99758 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ABCA3Q99758 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
ABCA3Q99758 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ABCA3Q99758 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.68■■□□□ 1.06
ABCA3Q99758 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.68■■□□□ 1.06
ABCA3Q99758 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ABCA3Q99758 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ABCA3Q99758 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
ABCA3Q99758 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
ABCA3Q99758 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA3Q99758 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.67■■□□□ 1.06
ABCA3Q99758 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA3Q99758 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA3Q99758 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA3Q99758 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC21.67■■□□□ 1.06
ABCA3Q99758 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA3Q99758 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA3Q99758 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA3Q99758 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA3Q99758 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC21.67■■□□□ 1.06
ABCA3Q99758 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA3Q99758 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC21.67■■□□□ 1.06
ABCA3Q99758 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC21.67■■□□□ 1.06
ABCA3Q99758 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC21.67■■□□□ 1.06
ABCA3Q99758 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA3Q99758 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.67■■□□□ 1.06
ABCA3Q99758 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
ABCA3Q99758 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA3Q99758 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA3Q99758 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
ABCA3Q99758 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC21.67■■□□□ 1.06
ABCA3Q99758 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.66■■□□□ 1.06
ABCA3Q99758 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ABCA3Q99758 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ABCA3Q99758 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC21.66■■□□□ 1.06
ABCA3Q99758 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC21.66■■□□□ 1.06
ABCA3Q99758 AC026954.1-201ENST00000429771 1293 ntBASIC21.66■■□□□ 1.06
ABCA3Q99758 YBX1P6-201ENST00000442962 1002 ntBASIC21.66■■□□□ 1.06
ABCA3Q99758 FAM86LP-201ENST00000478302 853 ntBASIC21.66■■□□□ 1.06
ABCA3Q99758 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC21.66■■□□□ 1.06
ABCA3Q99758 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC21.66■■□□□ 1.06
ABCA3Q99758 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC21.66■■□□□ 1.06
ABCA3Q99758 AC010328.2-201ENST00000597698 1111 ntBASIC21.66■■□□□ 1.06
ABCA3Q99758 AL365330.1-201ENST00000607459 531 ntBASIC21.66■■□□□ 1.06
ABCA3Q99758 AC005252.2-201ENST00000624630 1141 ntBASIC21.66■■□□□ 1.06
ABCA3Q99758 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
ABCA3Q99758 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
ABCA3Q99758 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ABCA3Q99758 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
ABCA3Q99758 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ABCA3Q99758 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ABCA3Q99758 AC092506.1-202ENST00000401022 528 ntBASIC21.66■■□□□ 1.06
ABCA3Q99758 FO393414.2-201ENST00000405153 598 ntBASIC21.66■■□□□ 1.06
ABCA3Q99758 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC21.66■■□□□ 1.06
ABCA3Q99758 PARP8-206ENST00000503665 572 ntTSL 4 BASIC21.66■■□□□ 1.06
ABCA3Q99758 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC21.66■■□□□ 1.06
ABCA3Q99758 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC21.66■■□□□ 1.06
ABCA3Q99758 AC005695.3-201ENST00000614522 232 ntBASIC21.66■■□□□ 1.06
ABCA3Q99758 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC21.66■■□□□ 1.06
ABCA3Q99758 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
ABCA3Q99758 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
ABCA3Q99758 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
ABCA3Q99758 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
ABCA3Q99758 AC092068.3-201ENST00000587894 2016 ntBASIC21.65■■□□□ 1.06
ABCA3Q99758 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ABCA3Q99758 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
ABCA3Q99758 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.65■■□□□ 1.06
ABCA3Q99758 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.65■■□□□ 1.06
ABCA3Q99758 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC21.65■■□□□ 1.06
ABCA3Q99758 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ABCA3Q99758 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ABCA3Q99758 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ABCA3Q99758 CROCCP2-202ENST00000412962 2773 ntBASIC21.65■■□□□ 1.06
ABCA3Q99758 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ABCA3Q99758 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
ABCA3Q99758 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
ABCA3Q99758 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC21.65■■□□□ 1.06
ABCA3Q99758 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC21.65■■□□□ 1.06
ABCA3Q99758 AC245100.5-201ENST00000452108 331 ntBASIC21.65■■□□□ 1.06
ABCA3Q99758 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC21.65■■□□□ 1.06
ABCA3Q99758 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ABCA3Q99758 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ABCA3Q99758 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
ABCA3Q99758 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC21.65■■□□□ 1.06
ABCA3Q99758 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms