Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 KRT18P28-201ENST00000453838 1332 ntBASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLIP3Q96DZ5 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 METTL21AP1-201ENST00000438852 635 ntBASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 AC023824.1-201ENST00000562945 2975 ntBASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 AL645728.2-201ENST00000641974 660 ntBASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 AC092919.2-201ENST00000623631 1645 ntBASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 AC093525.9-201ENST00000624961 1746 ntBASIC16.11■□□□□ 0.17
CLIP3Q96DZ5 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 EGFEM1P-202ENST00000431685 1563 ntBASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 AC107918.2-201ENST00000530817 355 ntBASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 AP002472.1-201ENST00000577490 586 ntBASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 AC080080.1-201ENST00000625121 2420 ntBASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CLIP3Q96DZ5 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms