Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SKA3Q8IX90 AL353732.1-201ENST00000569618 1459 ntBASIC14.77□□□□□ -0.04
SKA3Q8IX90 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
SKA3Q8IX90 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SKA3Q8IX90 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
SKA3Q8IX90 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SKA3Q8IX90 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
SKA3Q8IX90 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SKA3Q8IX90 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC14.77□□□□□ -0.04
SKA3Q8IX90 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SKA3Q8IX90 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 LBH-204ENST00000406087 559 ntTSL 4 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 IGLL3P-201ENST00000412472 434 ntBASIC14.77□□□□□ -0.05
SKA3Q8IX90 AC007967.2-201ENST00000432613 625 ntBASIC14.77□□□□□ -0.05
SKA3Q8IX90 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 AC106730.1-201ENST00000566722 1090 ntBASIC14.77□□□□□ -0.05
SKA3Q8IX90 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 AC091167.2-201ENST00000579581 588 ntBASIC14.77□□□□□ -0.05
SKA3Q8IX90 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 MIR4492-201ENST00000581627 80 ntBASIC14.77□□□□□ -0.05
SKA3Q8IX90 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SKA3Q8IX90 ACTL9-202ENST00000612068 1252 ntBASIC14.77□□□□□ -0.05
SKA3Q8IX90 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
SKA3Q8IX90 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 AC131009.4-201ENST00000624048 1740 ntBASIC14.77□□□□□ -0.05
SKA3Q8IX90 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SKA3Q8IX90 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
SKA3Q8IX90 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
SKA3Q8IX90 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC14.77□□□□□ -0.05
SKA3Q8IX90 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SKA3Q8IX90 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 AL603756.1-201ENST00000606511 2163 ntBASIC14.76□□□□□ -0.05
SKA3Q8IX90 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 CRCP-205ENST00000431089 942 ntTSL 2 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 AC013467.2-201ENST00000605472 835 ntBASIC14.76□□□□□ -0.05
SKA3Q8IX90 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 AC005052.1-201ENST00000625181 2492 ntBASIC14.76□□□□□ -0.05
SKA3Q8IX90 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.76□□□□□ -0.05
SKA3Q8IX90 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SKA3Q8IX90 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SKA3Q8IX90 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
SKA3Q8IX90 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms