Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
KRT39Q6A163 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.95■□□□□ 0.46
KRT39Q6A163 MIR574-201ENST00000385209 96 ntBASIC17.95■□□□□ 0.46
KRT39Q6A163 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.95■□□□□ 0.46
KRT39Q6A163 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.95■□□□□ 0.46
KRT39Q6A163 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
KRT39Q6A163 KRT18P58-201ENST00000527480 1120 ntBASIC17.95■□□□□ 0.46
KRT39Q6A163 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
KRT39Q6A163 AC092865.6-201ENST00000642101 219 ntBASIC17.95■□□□□ 0.46
KRT39Q6A163 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.95■□□□□ 0.46
KRT39Q6A163 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
KRT39Q6A163 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
KRT39Q6A163 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.95■□□□□ 0.46
KRT39Q6A163 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.95■□□□□ 0.46
KRT39Q6A163 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
KRT39Q6A163 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
KRT39Q6A163 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.95■□□□□ 0.46
KRT39Q6A163 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
KRT39Q6A163 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.95■□□□□ 0.46
KRT39Q6A163 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.95■□□□□ 0.46
KRT39Q6A163 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
KRT39Q6A163 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.95■□□□□ 0.46
KRT39Q6A163 AL662844.4-201ENST00000606367 2838 ntBASIC17.94■□□□□ 0.46
KRT39Q6A163 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
KRT39Q6A163 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.94■□□□□ 0.46
KRT39Q6A163 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
KRT39Q6A163 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
KRT39Q6A163 AC006449.5-201ENST00000610658 2098 ntBASIC17.94■□□□□ 0.46
KRT39Q6A163 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
KRT39Q6A163 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
KRT39Q6A163 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
KRT39Q6A163 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
KRT39Q6A163 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
KRT39Q6A163 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.94■□□□□ 0.46
KRT39Q6A163 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.94■□□□□ 0.46
KRT39Q6A163 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.94■□□□□ 0.46
KRT39Q6A163 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.94■□□□□ 0.46
KRT39Q6A163 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.94■□□□□ 0.46
KRT39Q6A163 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.94■□□□□ 0.46
KRT39Q6A163 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.94■□□□□ 0.46
KRT39Q6A163 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.94■□□□□ 0.46
KRT39Q6A163 AC068137.2-201ENST00000605408 478 ntBASIC17.94■□□□□ 0.46
KRT39Q6A163 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
KRT39Q6A163 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
KRT39Q6A163 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
KRT39Q6A163 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
KRT39Q6A163 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
KRT39Q6A163 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.94■□□□□ 0.46
KRT39Q6A163 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.94■□□□□ 0.46
KRT39Q6A163 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
KRT39Q6A163 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
KRT39Q6A163 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
KRT39Q6A163 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
KRT39Q6A163 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
KRT39Q6A163 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
KRT39Q6A163 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.93■□□□□ 0.46
KRT39Q6A163 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.93■□□□□ 0.46
KRT39Q6A163 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.93■□□□□ 0.46
KRT39Q6A163 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
KRT39Q6A163 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.93■□□□□ 0.46
KRT39Q6A163 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
KRT39Q6A163 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 AC092474.2-201ENST00000424288 719 ntBASIC17.93■□□□□ 0.46
KRT39Q6A163 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.93■□□□□ 0.46
KRT39Q6A163 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
KRT39Q6A163 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
KRT39Q6A163 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.93■□□□□ 0.46
KRT39Q6A163 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
KRT39Q6A163 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.93■□□□□ 0.46
KRT39Q6A163 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
KRT39Q6A163 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
KRT39Q6A163 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
KRT39Q6A163 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
KRT39Q6A163 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.92■□□□□ 0.46
KRT39Q6A163 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
KRT39Q6A163 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.92■□□□□ 0.46
KRT39Q6A163 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
KRT39Q6A163 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
KRT39Q6A163 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
KRT39Q6A163 AC092919.2-201ENST00000623631 1645 ntBASIC17.92■□□□□ 0.46
KRT39Q6A163 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
KRT39Q6A163 MIR940-201ENST00000401276 94 ntBASIC17.92■□□□□ 0.46
KRT39Q6A163 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms