Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL28A1Q2UY09 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COL28A1Q2UY09 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COL28A1Q2UY09 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL28A1Q2UY09 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COL28A1Q2UY09 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
COL28A1Q2UY09 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.02■□□□□ 0.15
COL28A1Q2UY09 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL28A1Q2UY09 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
COL28A1Q2UY09 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 MYCLP1-201ENST00000372451 1075 ntBASIC16.01■□□□□ 0.15
COL28A1Q2UY09 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 SPTLC1P1-201ENST00000447199 261 ntBASIC16.01■□□□□ 0.15
COL28A1Q2UY09 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 STK19B-204ENST00000512515 211 ntBASIC16.01■□□□□ 0.15
COL28A1Q2UY09 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 MIR4525-201ENST00000580000 75 ntBASIC16.01■□□□□ 0.15
COL28A1Q2UY09 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 AL645608.8-201ENST00000606034 2086 ntBASIC16.01■□□□□ 0.15
COL28A1Q2UY09 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.01■□□□□ 0.15
COL28A1Q2UY09 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16■□□□□ 0.15
COL28A1Q2UY09 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 AKAP8P1-201ENST00000434743 1349 ntBASIC16■□□□□ 0.15
COL28A1Q2UY09 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16■□□□□ 0.15
COL28A1Q2UY09 AL133338.1-201ENST00000565695 1517 ntBASIC16■□□□□ 0.15
COL28A1Q2UY09 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
COL28A1Q2UY09 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16■□□□□ 0.15
COL28A1Q2UY09 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16■□□□□ 0.15
COL28A1Q2UY09 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 PARP8-206ENST00000503665 572 ntTSL 4 BASIC16■□□□□ 0.15
COL28A1Q2UY09 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
COL28A1Q2UY09 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16■□□□□ 0.15
COL28A1Q2UY09 TP53TG3HP-202ENST00000569755 579 ntBASIC16■□□□□ 0.15
COL28A1Q2UY09 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16■□□□□ 0.15
COL28A1Q2UY09 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16■□□□□ 0.15
COL28A1Q2UY09 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16■□□□□ 0.15
COL28A1Q2UY09 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16■□□□□ 0.15
COL28A1Q2UY09 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
COL28A1Q2UY09 MST1L-201ENST00000442552 2185 ntBASIC16■□□□□ 0.15
COL28A1Q2UY09 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL28A1Q2UY09 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC15.99■□□□□ 0.15
COL28A1Q2UY09 AL118508.1-201ENST00000613502 2345 ntBASIC15.99■□□□□ 0.15
COL28A1Q2UY09 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms