Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.41■□□□□ 0.06
RNF4P78317 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.41■□□□□ 0.06
RNF4P78317 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.41■□□□□ 0.06
RNF4P78317 AC016027.1-202ENST00000607927 1699 ntBASIC15.41■□□□□ 0.06
RNF4P78317 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.41■□□□□ 0.06
RNF4P78317 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RNF4P78317 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.4■□□□□ 0.06
RNF4P78317 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.4■□□□□ 0.06
RNF4P78317 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
RNF4P78317 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
RNF4P78317 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
RNF4P78317 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.4■□□□□ 0.06
RNF4P78317 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
RNF4P78317 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.4■□□□□ 0.06
RNF4P78317 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.4■□□□□ 0.06
RNF4P78317 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.4■□□□□ 0.06
RNF4P78317 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.4■□□□□ 0.06
RNF4P78317 KRT8P48-201ENST00000515599 1220 ntBASIC15.4■□□□□ 0.06
RNF4P78317 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.4■□□□□ 0.06
RNF4P78317 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.4■□□□□ 0.06
RNF4P78317 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
RNF4P78317 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
RNF4P78317 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.4■□□□□ 0.06
RNF4P78317 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.4■□□□□ 0.06
RNF4P78317 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.4■□□□□ 0.06
RNF4P78317 AP001160.2-201ENST00000596071 487 ntBASIC15.4■□□□□ 0.06
RNF4P78317 AC022145.2-201ENST00000598203 171 ntBASIC15.4■□□□□ 0.06
RNF4P78317 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.4■□□□□ 0.06
RNF4P78317 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.4■□□□□ 0.06
RNF4P78317 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.4■□□□□ 0.06
RNF4P78317 AL513210.1-201ENST00000629608 234 ntBASIC15.4■□□□□ 0.06
RNF4P78317 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.4■□□□□ 0.06
RNF4P78317 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
RNF4P78317 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.4■□□□□ 0.06
RNF4P78317 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.4■□□□□ 0.06
RNF4P78317 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
RNF4P78317 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
RNF4P78317 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
RNF4P78317 AD000864.1-201ENST00000624076 2295 ntBASIC15.4■□□□□ 0.06
RNF4P78317 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.4■□□□□ 0.06
RNF4P78317 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RNF4P78317 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.39■□□□□ 0.05
RNF4P78317 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.39■□□□□ 0.05
RNF4P78317 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.39■□□□□ 0.05
RNF4P78317 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
RNF4P78317 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
RNF4P78317 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RNF4P78317 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
RNF4P78317 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RNF4P78317 CNN2P11-201ENST00000429351 262 ntBASIC15.39■□□□□ 0.05
RNF4P78317 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.39■□□□□ 0.05
RNF4P78317 AC243562.1-201ENST00000560672 389 ntBASIC15.39■□□□□ 0.05
RNF4P78317 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
RNF4P78317 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.39■□□□□ 0.05
RNF4P78317 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
RNF4P78317 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.39■□□□□ 0.05
RNF4P78317 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.39■□□□□ 0.05
RNF4P78317 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RNF4P78317 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms