Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 RNF216P1-203ENST00000404404 2427 ntBASIC17.59■□□□□ 0.41
LIG3P49916 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIG3P49916 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
LIG3P49916 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
LIG3P49916 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
LIG3P49916 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
LIG3P49916 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
LIG3P49916 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LIG3P49916 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.58■□□□□ 0.41
LIG3P49916 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIG3P49916 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIG3P49916 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LIG3P49916 AL353593.2-201ENST00000602529 1483 ntBASIC17.58■□□□□ 0.41
LIG3P49916 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 HLA-A-201ENST00000376802 1334 ntBASIC17.58■□□□□ 0.4
LIG3P49916 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
LIG3P49916 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.58■□□□□ 0.4
LIG3P49916 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.58■□□□□ 0.4
LIG3P49916 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.58■□□□□ 0.4
LIG3P49916 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.58■□□□□ 0.4
LIG3P49916 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.58■□□□□ 0.4
LIG3P49916 AC079776.4-201ENST00000511039 504 ntBASIC17.58■□□□□ 0.4
LIG3P49916 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 AC021087.4-201ENST00000563761 564 ntBASIC17.58■□□□□ 0.4
LIG3P49916 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.58■□□□□ 0.4
LIG3P49916 AL139288.1-201ENST00000623748 933 ntBASIC17.58■□□□□ 0.4
LIG3P49916 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
LIG3P49916 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.58■□□□□ 0.4
LIG3P49916 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
LIG3P49916 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
LIG3P49916 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.58■□□□□ 0.4
LIG3P49916 LINC00304-203ENST00000565008 1864 ntBASIC17.58■□□□□ 0.4
LIG3P49916 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
LIG3P49916 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
LIG3P49916 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
LIG3P49916 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.58■□□□□ 0.4
LIG3P49916 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.58■□□□□ 0.4
LIG3P49916 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
LIG3P49916 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIG3P49916 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
LIG3P49916 AC079776.2-201ENST00000641154 1609 ntBASIC17.58■□□□□ 0.4
LIG3P49916 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.57■□□□□ 0.4
LIG3P49916 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.57■□□□□ 0.4
LIG3P49916 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.57■□□□□ 0.4
LIG3P49916 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.57■□□□□ 0.4
LIG3P49916 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 AC018712.1-201ENST00000455767 687 ntBASIC17.57■□□□□ 0.4
LIG3P49916 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LIG3P49916 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.57■□□□□ 0.4
LIG3P49916 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
LIG3P49916 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.57■□□□□ 0.4
LIG3P49916 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.57■□□□□ 0.4
LIG3P49916 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.57■□□□□ 0.4
LIG3P49916 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC17.57■□□□□ 0.4
LIG3P49916 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
LIG3P49916 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LIG3P49916 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.57■□□□□ 0.4
LIG3P49916 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LIG3P49916 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG3P49916 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC17.56■□□□□ 0.4
LIG3P49916 AC132938.5-201ENST00000624980 1813 ntBASIC17.56■□□□□ 0.4
LIG3P49916 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 AC126177.1-201ENST00000547829 2218 ntBASIC17.56■□□□□ 0.4
LIG3P49916 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.56■□□□□ 0.4
LIG3P49916 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.56■□□□□ 0.4
LIG3P49916 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG3P49916 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms