Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.51■□□□□ 0.39
BDNFP23560 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.51■□□□□ 0.39
BDNFP23560 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.51■□□□□ 0.39
BDNFP23560 GPS2P2-201ENST00000430745 888 ntBASIC17.51■□□□□ 0.39
BDNFP23560 RBPMS2P1-201ENST00000437762 623 ntBASIC17.51■□□□□ 0.39
BDNFP23560 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
BDNFP23560 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.51■□□□□ 0.39
BDNFP23560 RFPL4AP1-201ENST00000530883 850 ntBASIC17.51■□□□□ 0.39
BDNFP23560 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.51■□□□□ 0.39
BDNFP23560 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
BDNFP23560 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.51■□□□□ 0.39
BDNFP23560 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.51■□□□□ 0.39
BDNFP23560 AC106028.4-201ENST00000614509 607 ntBASIC17.51■□□□□ 0.39
BDNFP23560 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.51■□□□□ 0.39
BDNFP23560 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
BDNFP23560 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
BDNFP23560 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
BDNFP23560 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
BDNFP23560 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.5■□□□□ 0.39
BDNFP23560 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
BDNFP23560 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
BDNFP23560 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 MIR346-201ENST00000362234 95 ntBASIC17.5■□□□□ 0.39
BDNFP23560 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
BDNFP23560 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.5■□□□□ 0.39
BDNFP23560 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.5■□□□□ 0.39
BDNFP23560 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.5■□□□□ 0.39
BDNFP23560 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
BDNFP23560 AC025678.2-201ENST00000562061 970 ntBASIC17.5■□□□□ 0.39
BDNFP23560 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.5■□□□□ 0.39
BDNFP23560 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.5■□□□□ 0.39
BDNFP23560 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.5■□□□□ 0.39
BDNFP23560 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.5■□□□□ 0.39
BDNFP23560 AC084121.4-201ENST00000641598 221 ntBASIC17.5■□□□□ 0.39
BDNFP23560 AF228730.8-201ENST00000642140 221 ntBASIC17.5■□□□□ 0.39
BDNFP23560 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 AL031731.1-201ENST00000642131 2094 ntBASIC17.5■□□□□ 0.39
BDNFP23560 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
BDNFP23560 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
BDNFP23560 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
BDNFP23560 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
BDNFP23560 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BDNFP23560 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
BDNFP23560 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
BDNFP23560 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 AC006538.1-201ENST00000567905 1585 ntBASIC17.49■□□□□ 0.39
BDNFP23560 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
BDNFP23560 PCDHA12-202ENST00000613593 2588 ntBASIC17.49■□□□□ 0.39
BDNFP23560 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
BDNFP23560 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
BDNFP23560 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
BDNFP23560 UBALD1-205ENST00000590891 2641 ntBASIC17.49■□□□□ 0.39
BDNFP23560 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
BDNFP23560 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
BDNFP23560 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.49■□□□□ 0.39
BDNFP23560 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.49■□□□□ 0.39
BDNFP23560 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.49■□□□□ 0.39
BDNFP23560 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
BDNFP23560 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms