Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
GGPS1O95749 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.62■□□□□ 0.57
GGPS1O95749 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
GGPS1O95749 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
GGPS1O95749 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
GGPS1O95749 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.62■□□□□ 0.57
GGPS1O95749 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.62■□□□□ 0.57
GGPS1O95749 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
GGPS1O95749 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.62■□□□□ 0.57
GGPS1O95749 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.62■□□□□ 0.57
GGPS1O95749 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.62■□□□□ 0.57
GGPS1O95749 AL158211.3-201ENST00000607385 239 ntBASIC18.62■□□□□ 0.57
GGPS1O95749 AC018529.1-201ENST00000613063 361 ntBASIC18.62■□□□□ 0.57
GGPS1O95749 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.62■□□□□ 0.57
GGPS1O95749 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
GGPS1O95749 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.62■□□□□ 0.57
GGPS1O95749 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.62■□□□□ 0.57
GGPS1O95749 AC073439.1-201ENST00000624121 1774 ntBASIC18.62■□□□□ 0.57
GGPS1O95749 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
GGPS1O95749 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
GGPS1O95749 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.62■□□□□ 0.57
GGPS1O95749 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
GGPS1O95749 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
GGPS1O95749 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
GGPS1O95749 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.61■□□□□ 0.57
GGPS1O95749 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
GGPS1O95749 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.61■□□□□ 0.57
GGPS1O95749 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
GGPS1O95749 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.61■□□□□ 0.57
GGPS1O95749 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
GGPS1O95749 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
GGPS1O95749 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.61■□□□□ 0.57
GGPS1O95749 AL035633.1-201ENST00000406139 838 ntBASIC18.61■□□□□ 0.57
GGPS1O95749 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC18.61■□□□□ 0.57
GGPS1O95749 AC097493.3-201ENST00000509725 367 ntBASIC18.61■□□□□ 0.57
GGPS1O95749 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
GGPS1O95749 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.61■□□□□ 0.57
GGPS1O95749 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.61■□□□□ 0.57
GGPS1O95749 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
GGPS1O95749 AC022211.2-201ENST00000585075 2527 ntBASIC18.61■□□□□ 0.57
GGPS1O95749 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
GGPS1O95749 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
GGPS1O95749 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
GGPS1O95749 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
GGPS1O95749 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
GGPS1O95749 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.61■□□□□ 0.57
GGPS1O95749 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
GGPS1O95749 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.6■□□□□ 0.57
GGPS1O95749 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.6■□□□□ 0.57
GGPS1O95749 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.6■□□□□ 0.57
GGPS1O95749 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.6■□□□□ 0.57
GGPS1O95749 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
GGPS1O95749 AL645728.1-201ENST00000366221 2101 ntBASIC18.6■□□□□ 0.57
GGPS1O95749 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.6■□□□□ 0.57
GGPS1O95749 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.6■□□□□ 0.57
GGPS1O95749 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.6■□□□□ 0.57
GGPS1O95749 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.6■□□□□ 0.57
GGPS1O95749 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.6■□□□□ 0.57
GGPS1O95749 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 AC003101.2-201ENST00000612557 442 ntBASIC18.6■□□□□ 0.57
GGPS1O95749 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
GGPS1O95749 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
GGPS1O95749 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
GGPS1O95749 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
GGPS1O95749 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.6■□□□□ 0.57
GGPS1O95749 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
GGPS1O95749 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
GGPS1O95749 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
GGPS1O95749 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.59■□□□□ 0.57
GGPS1O95749 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
GGPS1O95749 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
GGPS1O95749 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
GGPS1O95749 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.59■□□□□ 0.57
GGPS1O95749 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
GGPS1O95749 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
GGPS1O95749 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
GGPS1O95749 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
GGPS1O95749 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
GGPS1O95749 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
GGPS1O95749 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
GGPS1O95749 AC092580.3-201ENST00000430932 139 ntBASIC18.59■□□□□ 0.57
GGPS1O95749 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.59■□□□□ 0.57
GGPS1O95749 QPRT-203ENST00000562473 579 ntTSL 3 BASIC18.59■□□□□ 0.57
GGPS1O95749 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
GGPS1O95749 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms