Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP2AO43633 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP2AO43633 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP2AO43633 RN7SL589P-201ENST00000481268 310 ntBASIC18.7■□□□□ 0.58
CHMP2AO43633 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.7■□□□□ 0.58
CHMP2AO43633 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.7■□□□□ 0.58
CHMP2AO43633 AC243562.1-201ENST00000560672 389 ntBASIC18.7■□□□□ 0.58
CHMP2AO43633 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP2AO43633 AC027612.4-201ENST00000605371 583 ntBASIC18.7■□□□□ 0.58
CHMP2AO43633 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.7■□□□□ 0.58
CHMP2AO43633 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CHMP2AO43633 FLJ38576-201ENST00000623820 2459 ntBASIC18.7■□□□□ 0.58
CHMP2AO43633 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP2AO43633 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP2AO43633 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP2AO43633 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CHMP2AO43633 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CHMP2AO43633 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.7■□□□□ 0.58
CHMP2AO43633 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.7■□□□□ 0.58
CHMP2AO43633 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CHMP2AO43633 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.7■□□□□ 0.58
CHMP2AO43633 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CHMP2AO43633 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.69■□□□□ 0.58
CHMP2AO43633 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.69■□□□□ 0.58
CHMP2AO43633 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.69■□□□□ 0.58
CHMP2AO43633 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CHMP2AO43633 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP2AO43633 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.69■□□□□ 0.58
CHMP2AO43633 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
CHMP2AO43633 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP2AO43633 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
CHMP2AO43633 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.69■□□□□ 0.58
CHMP2AO43633 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CHMP2AO43633 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.69■□□□□ 0.58
CHMP2AO43633 AC004835.2-201ENST00000603762 682 ntBASIC18.69■□□□□ 0.58
CHMP2AO43633 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CHMP2AO43633 ACE-204ENST00000428043 5120 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP2AO43633 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
CHMP2AO43633 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP2AO43633 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.69■□□□□ 0.58
CHMP2AO43633 AKAP8P1-201ENST00000434743 1349 ntBASIC18.69■□□□□ 0.58
CHMP2AO43633 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CHMP2AO43633 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CHMP2AO43633 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.69■□□□□ 0.58
CHMP2AO43633 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CHMP2AO43633 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CHMP2AO43633 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CHMP2AO43633 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CHMP2AO43633 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CHMP2AO43633 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 AL592309.1-201ENST00000443127 649 ntBASIC18.68■□□□□ 0.58
CHMP2AO43633 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CHMP2AO43633 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.68■□□□□ 0.58
CHMP2AO43633 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.68■□□□□ 0.58
CHMP2AO43633 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.68■□□□□ 0.58
CHMP2AO43633 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CHMP2AO43633 AL139011.1-202ENST00000642063 584 ntBASIC18.68■□□□□ 0.58
CHMP2AO43633 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.68■□□□□ 0.58
CHMP2AO43633 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.68■□□□□ 0.58
CHMP2AO43633 HLA-A-202ENST00000376806 1854 ntBASIC18.68■□□□□ 0.58
CHMP2AO43633 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.68■□□□□ 0.58
CHMP2AO43633 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.68■□□□□ 0.58
CHMP2AO43633 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CHMP2AO43633 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CHMP2AO43633 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CHMP2AO43633 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP2AO43633 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP2AO43633 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP2AO43633 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP2AO43633 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP2AO43633 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CHMP2AO43633 AL031731.1-201ENST00000642131 2094 ntBASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms