Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.18■□□□□ 0.5
CLDN3O15551 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
CLDN3O15551 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CLDN3O15551 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CLDN3O15551 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.18■□□□□ 0.5
CLDN3O15551 AL512652.2-201ENST00000625156 1716 ntBASIC18.18■□□□□ 0.5
CLDN3O15551 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 FLJ38576-201ENST00000623820 2459 ntBASIC18.17■□□□□ 0.5
CLDN3O15551 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
CLDN3O15551 AC006538.1-201ENST00000567905 1585 ntBASIC18.17■□□□□ 0.5
CLDN3O15551 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CLDN3O15551 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.17■□□□□ 0.5
CLDN3O15551 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 AC254562.1-201ENST00000417586 456 ntBASIC18.17■□□□□ 0.5
CLDN3O15551 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.17■□□□□ 0.5
CLDN3O15551 DNAJB3-202ENST00000449667 1266 ntBASIC18.17■□□□□ 0.5
CLDN3O15551 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.17■□□□□ 0.5
CLDN3O15551 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.17■□□□□ 0.5
CLDN3O15551 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.17■□□□□ 0.5
CLDN3O15551 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.17■□□□□ 0.5
CLDN3O15551 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CLDN3O15551 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CLDN3O15551 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.17■□□□□ 0.5
CLDN3O15551 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.17■□□□□ 0.5
CLDN3O15551 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.17■□□□□ 0.5
CLDN3O15551 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.17■□□□□ 0.5
CLDN3O15551 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.17■□□□□ 0.5
CLDN3O15551 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLDN3O15551 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.16■□□□□ 0.5
CLDN3O15551 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.16■□□□□ 0.5
CLDN3O15551 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CLDN3O15551 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.16■□□□□ 0.5
CLDN3O15551 SPDYE11-202ENST00000450699 704 ntBASIC18.16■□□□□ 0.5
CLDN3O15551 TIMM8BP1-201ENST00000452384 211 ntBASIC18.16■□□□□ 0.5
CLDN3O15551 HLA-J-202ENST00000469281 1241 ntBASIC18.16■□□□□ 0.5
CLDN3O15551 RN7SL589P-201ENST00000481268 310 ntBASIC18.16■□□□□ 0.5
CLDN3O15551 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.16■□□□□ 0.5
CLDN3O15551 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.16■□□□□ 0.5
CLDN3O15551 SNHG9-202ENST00000564014 471 ntBASIC18.16■□□□□ 0.5
CLDN3O15551 AL135744.1-201ENST00000565098 629 ntBASIC18.16■□□□□ 0.5
CLDN3O15551 SPDYE9P-201ENST00000570642 692 ntBASIC18.16■□□□□ 0.5
CLDN3O15551 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.16■□□□□ 0.5
CLDN3O15551 SPDYE10P-202ENST00000612005 668 ntBASIC18.16■□□□□ 0.5
CLDN3O15551 SPDYE8P-202ENST00000612377 668 ntBASIC18.16■□□□□ 0.5
CLDN3O15551 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.16■□□□□ 0.5
CLDN3O15551 AC105339.1-204ENST00000636249 355 ntBASIC18.16■□□□□ 0.5
CLDN3O15551 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
CLDN3O15551 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CLDN3O15551 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.16■□□□□ 0.5
CLDN3O15551 PCDHA14-201ENST00000506751 2298 ntBASIC18.16■□□□□ 0.5
CLDN3O15551 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.16■□□□□ 0.5
CLDN3O15551 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.16■□□□□ 0.5
CLDN3O15551 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CLDN3O15551 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLDN3O15551 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.15■□□□□ 0.5
CLDN3O15551 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 AC016027.1-202ENST00000607927 1699 ntBASIC18.15■□□□□ 0.5
CLDN3O15551 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.15■□□□□ 0.5
CLDN3O15551 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.15■□□□□ 0.5
CLDN3O15551 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLDN3O15551 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.15■□□□□ 0.5
CLDN3O15551 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms