Protein–RNA interactions for Protein: O00148

DDX39A, ATP-dependent RNA helicase DDX39A, humanhuman

Known RBP Predictions only

Length 427 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39AO00148 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
DDX39AO00148 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
DDX39AO00148 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
DDX39AO00148 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
DDX39AO00148 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
DDX39AO00148 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.7■□□□□ 0.58
DDX39AO00148 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DDX39AO00148 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
DDX39AO00148 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.7■□□□□ 0.58
DDX39AO00148 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
DDX39AO00148 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX39AO00148 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
DDX39AO00148 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.69■□□□□ 0.58
DDX39AO00148 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
DDX39AO00148 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
DDX39AO00148 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
DDX39AO00148 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
DDX39AO00148 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX39AO00148 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DDX39AO00148 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX39AO00148 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
DDX39AO00148 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.69■□□□□ 0.58
DDX39AO00148 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DDX39AO00148 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DDX39AO00148 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX39AO00148 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.69■□□□□ 0.58
DDX39AO00148 KRT18P34-201ENST00000488218 1270 ntBASIC18.69■□□□□ 0.58
DDX39AO00148 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.69■□□□□ 0.58
DDX39AO00148 LINC01225-203ENST00000563550 1244 ntBASIC18.69■□□□□ 0.58
DDX39AO00148 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.69■□□□□ 0.58
DDX39AO00148 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DDX39AO00148 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.69■□□□□ 0.58
DDX39AO00148 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DDX39AO00148 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.69■□□□□ 0.58
DDX39AO00148 AC009093.7-201ENST00000623853 1223 ntBASIC18.69■□□□□ 0.58
DDX39AO00148 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.69■□□□□ 0.58
DDX39AO00148 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DDX39AO00148 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.69■□□□□ 0.58
DDX39AO00148 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.69■□□□□ 0.58
DDX39AO00148 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX39AO00148 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX39AO00148 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.69■□□□□ 0.58
DDX39AO00148 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
DDX39AO00148 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX39AO00148 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.69■□□□□ 0.58
DDX39AO00148 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.69■□□□□ 0.58
DDX39AO00148 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.69■□□□□ 0.58
DDX39AO00148 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DDX39AO00148 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
DDX39AO00148 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DDX39AO00148 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
DDX39AO00148 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.68■□□□□ 0.58
DDX39AO00148 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.68■□□□□ 0.58
DDX39AO00148 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.68■□□□□ 0.58
DDX39AO00148 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DDX39AO00148 SLC25A39P2-201ENST00000537614 270 ntBASIC18.68■□□□□ 0.58
DDX39AO00148 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.68■□□□□ 0.58
DDX39AO00148 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DDX39AO00148 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.68■□□□□ 0.58
DDX39AO00148 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.68■□□□□ 0.58
DDX39AO00148 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.68■□□□□ 0.58
DDX39AO00148 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DDX39AO00148 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.68■□□□□ 0.58
DDX39AO00148 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DDX39AO00148 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.68■□□□□ 0.58
DDX39AO00148 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DDX39AO00148 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.68■□□□□ 0.58
DDX39AO00148 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
DDX39AO00148 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DDX39AO00148 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.68■□□□□ 0.58
DDX39AO00148 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.68■□□□□ 0.58
DDX39AO00148 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
DDX39AO00148 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.68■□□□□ 0.58
DDX39AO00148 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.68■□□□□ 0.58
DDX39AO00148 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX39AO00148 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
DDX39AO00148 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.67■□□□□ 0.58
DDX39AO00148 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX39AO00148 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
DDX39AO00148 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX39AO00148 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
DDX39AO00148 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX39AO00148 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX39AO00148 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX39AO00148 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
DDX39AO00148 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.67■□□□□ 0.58
DDX39AO00148 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
DDX39AO00148 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.67■□□□□ 0.58
DDX39AO00148 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.67■□□□□ 0.58
DDX39AO00148 RBPMS2P1-201ENST00000437762 623 ntBASIC18.67■□□□□ 0.58
DDX39AO00148 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
DDX39AO00148 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.67■□□□□ 0.58
DDX39AO00148 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX39AO00148 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
DDX39AO00148 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
DDX39AO00148 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX39AO00148 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.67■□□□□ 0.58
DDX39AO00148 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
DDX39AO00148 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
DDX39AO00148 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms