Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC11.65□□□□□ -0.55
UBE2D4Q9Y2X8 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 HLA-DQB2-231ENST00000435145 2026 ntBASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 SIGLEC16-201ENST00000599858 1437 ntBASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 CHCHD2P8-201ENST00000429873 447 ntBASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 AC022616.7-201ENST00000525383 220 ntBASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 AL136038.3-201ENST00000561909 1096 ntBASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 LINC01238-205ENST00000567549 1107 ntBASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 NTF6B-201ENST00000591913 560 ntBASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC11.64□□□□□ -0.55
UBE2D4Q9Y2X8 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 AC126177.1-201ENST00000547829 2218 ntBASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 SUPT20HL2-201ENST00000486479 2409 ntBASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 BX276092.5-203ENST00000456199 560 ntBASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 MINOS1P3-201ENST00000457048 203 ntBASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 AC096582.2-201ENST00000510860 516 ntBASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC11.63□□□□□ -0.55
UBE2D4Q9Y2X8 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms