Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 HILS1-202ENST00000545329 423 ntBASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 AC138969.3-201ENST00000546612 1459 ntBASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 AC138932.2-201ENST00000548268 1459 ntBASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 AC126755.4-201ENST00000549796 1459 ntBASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIMD1Q9UGP4 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMD1Q9UGP4 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LIMD1Q9UGP4 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LIMD1Q9UGP4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMD1Q9UGP4 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.33■□□□□ 0.37
LIMD1Q9UGP4 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LIMD1Q9UGP4 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LIMD1Q9UGP4 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMD1Q9UGP4 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.33■□□□□ 0.37
LIMD1Q9UGP4 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMD1Q9UGP4 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMD1Q9UGP4 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 AC142381.1-201ENST00000426099 345 ntBASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 HLA-V-204ENST00000476601 1289 ntBASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 MIR3909-201ENST00000579518 119 ntBASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
LIMD1Q9UGP4 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 AC012317.2-201ENST00000623305 2251 ntBASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 AL353779.1-201ENST00000434793 351 ntBASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 API5-211ENST00000534695 560 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMD1Q9UGP4 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms