Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SIX2Q9NPC8 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SIX2Q9NPC8 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.83■□□□□ 0.45
SIX2Q9NPC8 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.83■□□□□ 0.45
SIX2Q9NPC8 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SIX2Q9NPC8 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
SIX2Q9NPC8 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SIX2Q9NPC8 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
SIX2Q9NPC8 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 AC079776.4-201ENST00000511039 504 ntBASIC17.83■□□□□ 0.44
SIX2Q9NPC8 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 OR6D1P-202ENST00000641007 5290 ntBASIC17.83■□□□□ 0.44
SIX2Q9NPC8 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SIX2Q9NPC8 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 KRT18P2-201ENST00000447938 1258 ntBASIC17.82■□□□□ 0.44
SIX2Q9NPC8 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SIX2Q9NPC8 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 CICP6-201ENST00000457191 2729 ntBASIC17.81■□□□□ 0.44
SIX2Q9NPC8 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 PMS2P4-201ENST00000412466 1052 ntBASIC17.81■□□□□ 0.44
SIX2Q9NPC8 FDX1P1-201ENST00000449115 551 ntBASIC17.81■□□□□ 0.44
SIX2Q9NPC8 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 AL121894.2-201ENST00000602977 491 ntBASIC17.81■□□□□ 0.44
SIX2Q9NPC8 AC021097.1-201ENST00000607902 574 ntBASIC17.81■□□□□ 0.44
SIX2Q9NPC8 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.81■□□□□ 0.44
SIX2Q9NPC8 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms