Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HIPK3Q9H422 SLC7A15P-201ENST00000424028 1363 ntBASIC18.08■□□□□ 0.49
HIPK3Q9H422 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
HIPK3Q9H422 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HIPK3Q9H422 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HIPK3Q9H422 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HIPK3Q9H422 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HIPK3Q9H422 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.08■□□□□ 0.48
HIPK3Q9H422 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.08■□□□□ 0.48
HIPK3Q9H422 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HIPK3Q9H422 AC055876.2-201ENST00000531834 546 ntBASIC18.08■□□□□ 0.48
HIPK3Q9H422 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.08■□□□□ 0.48
HIPK3Q9H422 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC18.08■□□□□ 0.48
HIPK3Q9H422 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.08■□□□□ 0.48
HIPK3Q9H422 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.08■□□□□ 0.48
HIPK3Q9H422 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HIPK3Q9H422 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.08■□□□□ 0.48
HIPK3Q9H422 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HIPK3Q9H422 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
HIPK3Q9H422 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HIPK3Q9H422 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HIPK3Q9H422 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HIPK3Q9H422 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
HIPK3Q9H422 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HIPK3Q9H422 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.08■□□□□ 0.48
HIPK3Q9H422 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.08■□□□□ 0.48
HIPK3Q9H422 AC068880.1-201ENST00000507289 2297 ntBASIC18.07■□□□□ 0.48
HIPK3Q9H422 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 SERBP1P3-201ENST00000459980 809 ntBASIC18.07■□□□□ 0.48
HIPK3Q9H422 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 TEX48-202ENST00000612244 662 ntTSL 3 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HIPK3Q9H422 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HIPK3Q9H422 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 AL671710.1-201ENST00000610245 2349 ntBASIC18.06■□□□□ 0.48
HIPK3Q9H422 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 AL354751.1-201ENST00000412768 1863 ntBASIC18.06■□□□□ 0.48
HIPK3Q9H422 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 AC114501.2-201ENST00000439631 535 ntBASIC18.06■□□□□ 0.48
HIPK3Q9H422 AC022210.1-201ENST00000449856 793 ntBASIC18.06■□□□□ 0.48
HIPK3Q9H422 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 RN7SL837P-201ENST00000463010 287 ntBASIC18.06■□□□□ 0.48
HIPK3Q9H422 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
HIPK3Q9H422 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HIPK3Q9H422 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms