Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC21.17■□□□□ 0.98
SHANK3Q9BYB0 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 AL391256.1-201ENST00000443260 1855 ntBASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 NME6-203ENST00000415644 849 ntTSL 2 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 NEU3-203ENST00000529024 581 ntTSL 3 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 USB1-203ENST00000539737 1212 ntTSL 2 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 BRI3BPP1-201ENST00000594224 787 ntBASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 GGT3P-204ENST00000453783 1664 ntBASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 AMT-232ENST00000636199 1546 ntTSL 5 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SHANK3Q9BYB0 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 PDIA3P1-201ENST00000471856 1510 ntBASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 AC104989.1-201ENST00000519711 778 ntBASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 AC124283.3-201ENST00000570869 594 ntBASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
SHANK3Q9BYB0 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.14■□□□□ 0.98
SHANK3Q9BYB0 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC21.14■□□□□ 0.98
SHANK3Q9BYB0 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC21.14■□□□□ 0.98
SHANK3Q9BYB0 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
SHANK3Q9BYB0 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
SHANK3Q9BYB0 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC21.14■□□□□ 0.97
SHANK3Q9BYB0 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SHANK3Q9BYB0 AC245100.5-201ENST00000452108 331 ntBASIC21.14■□□□□ 0.97
SHANK3Q9BYB0 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC21.14■□□□□ 0.97
SHANK3Q9BYB0 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHANK3Q9BYB0 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
SHANK3Q9BYB0 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SHANK3Q9BYB0 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
SHANK3Q9BYB0 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC21.14■□□□□ 0.97
SHANK3Q9BYB0 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHANK3Q9BYB0 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 GNRHR2-203ENST00000581100 1187 ntBASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 AL365330.1-201ENST00000607459 531 ntBASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 RPS24-214ENST00000613865 538 ntTSL 5 BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
SHANK3Q9BYB0 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms