Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC19.47■□□□□ 0.71
NUP88Q99567 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.47■□□□□ 0.71
NUP88Q99567 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUP88Q99567 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUP88Q99567 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NUP88Q99567 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.47■□□□□ 0.71
NUP88Q99567 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
NUP88Q99567 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUP88Q99567 AC011676.5-201ENST00000624864 2660 ntBASIC19.47■□□□□ 0.71
NUP88Q99567 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUP88Q99567 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.47■□□□□ 0.71
NUP88Q99567 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NUP88Q99567 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NUP88Q99567 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NUP88Q99567 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.47■□□□□ 0.71
NUP88Q99567 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.47■□□□□ 0.71
NUP88Q99567 RBPMS2P1-201ENST00000437762 623 ntBASIC19.47■□□□□ 0.71
NUP88Q99567 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC19.47■□□□□ 0.71
NUP88Q99567 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.47■□□□□ 0.71
NUP88Q99567 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.47■□□□□ 0.71
NUP88Q99567 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NUP88Q99567 VPS29-207ENST00000549970 818 ntTSL 3 BASIC19.47■□□□□ 0.71
NUP88Q99567 TSFM-210ENST00000550559 897 ntTSL 5 BASIC19.47■□□□□ 0.71
NUP88Q99567 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC19.47■□□□□ 0.71
NUP88Q99567 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
NUP88Q99567 AL138918.1-201ENST00000568306 659 ntBASIC19.47■□□□□ 0.71
NUP88Q99567 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
NUP88Q99567 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NUP88Q99567 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC19.47■□□□□ 0.71
NUP88Q99567 AP001350.2-201ENST00000625104 1094 ntBASIC19.47■□□□□ 0.71
NUP88Q99567 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC19.47■□□□□ 0.71
NUP88Q99567 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.47■□□□□ 0.71
NUP88Q99567 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.47■□□□□ 0.71
NUP88Q99567 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NUP88Q99567 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.47■□□□□ 0.71
NUP88Q99567 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
NUP88Q99567 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.47■□□□□ 0.71
NUP88Q99567 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
NUP88Q99567 AL671710.1-201ENST00000610245 2349 ntBASIC19.47■□□□□ 0.71
NUP88Q99567 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
NUP88Q99567 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.47■□□□□ 0.71
NUP88Q99567 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUP88Q99567 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
NUP88Q99567 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.46■□□□□ 0.71
NUP88Q99567 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.46■□□□□ 0.71
NUP88Q99567 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.46■□□□□ 0.71
NUP88Q99567 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.46■□□□□ 0.71
NUP88Q99567 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC19.46■□□□□ 0.71
NUP88Q99567 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.46■□□□□ 0.71
NUP88Q99567 IGHV3-62-201ENST00000520057 340 ntBASIC19.46■□□□□ 0.71
NUP88Q99567 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.46■□□□□ 0.71
NUP88Q99567 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC19.46■□□□□ 0.71
NUP88Q99567 DUX4L27-201ENST00000554796 1261 ntBASIC19.46■□□□□ 0.71
NUP88Q99567 AC005498.2-205ENST00000593218 784 ntBASIC19.46■□□□□ 0.71
NUP88Q99567 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC19.46■□□□□ 0.71
NUP88Q99567 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
NUP88Q99567 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC19.46■□□□□ 0.71
NUP88Q99567 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.46■□□□□ 0.71
NUP88Q99567 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
NUP88Q99567 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUP88Q99567 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC19.45■□□□□ 0.7
NUP88Q99567 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
NUP88Q99567 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
NUP88Q99567 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.45■□□□□ 0.7
NUP88Q99567 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.45■□□□□ 0.7
NUP88Q99567 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.45■□□□□ 0.7
NUP88Q99567 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NUP88Q99567 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
NUP88Q99567 PMS2P4-201ENST00000412466 1052 ntBASIC19.45■□□□□ 0.7
NUP88Q99567 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC19.45■□□□□ 0.7
NUP88Q99567 SLC25A39P2-201ENST00000537614 270 ntBASIC19.45■□□□□ 0.7
NUP88Q99567 AC124947.2-201ENST00000547118 1133 ntBASIC19.45■□□□□ 0.7
NUP88Q99567 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC19.45■□□□□ 0.7
NUP88Q99567 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
NUP88Q99567 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms