Protein–RNA interactions for Protein: Q8NFR7

CCDC148, Coiled-coil domain-containing protein 148, humanhuman

Predictions only

Length 591 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC148Q8NFR7 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC148Q8NFR7 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC148Q8NFR7 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC148Q8NFR7 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC148Q8NFR7 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC148Q8NFR7 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CCDC148Q8NFR7 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CCDC148Q8NFR7 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC148Q8NFR7 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC148Q8NFR7 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC148Q8NFR7 AL512652.2-201ENST00000625156 1716 ntBASIC19.2■□□□□ 0.66
CCDC148Q8NFR7 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 MCCD1P2-201ENST00000423228 335 ntBASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC148Q8NFR7 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 AC112191.1-201ENST00000523689 701 ntBASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC148Q8NFR7 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC148Q8NFR7 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC148Q8NFR7 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CCDC148Q8NFR7 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC148Q8NFR7 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC148Q8NFR7 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC148Q8NFR7 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms