Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS52Q8N1B4 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
VPS52Q8N1B4 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.08■□□□□ 0.49
VPS52Q8N1B4 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
VPS52Q8N1B4 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.08■□□□□ 0.49
VPS52Q8N1B4 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
VPS52Q8N1B4 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VPS52Q8N1B4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
VPS52Q8N1B4 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
VPS52Q8N1B4 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VPS52Q8N1B4 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VPS52Q8N1B4 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
VPS52Q8N1B4 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
VPS52Q8N1B4 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 SPCS2P4-201ENST00000436160 681 ntBASIC18.08■□□□□ 0.48
VPS52Q8N1B4 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 AL512356.2-201ENST00000546955 174 ntBASIC18.08■□□□□ 0.48
VPS52Q8N1B4 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 AC138761.1-201ENST00000584393 385 ntBASIC18.08■□□□□ 0.48
VPS52Q8N1B4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS52Q8N1B4 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 RBPMS2P1-201ENST00000437762 623 ntBASIC18.07■□□□□ 0.48
VPS52Q8N1B4 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 IGHV3-62-201ENST00000520057 340 ntBASIC18.07■□□□□ 0.48
VPS52Q8N1B4 AC069262.1-201ENST00000539058 672 ntBASIC18.07■□□□□ 0.48
VPS52Q8N1B4 AQP6-203ENST00000551733 849 ntTSL 3 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 AL009183.1-201ENST00000603760 355 ntBASIC18.07■□□□□ 0.48
VPS52Q8N1B4 AP001059.3-201ENST00000619053 235 ntBASIC18.07■□□□□ 0.48
VPS52Q8N1B4 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 AP001094.4-201ENST00000579008 2176 ntBASIC18.07■□□□□ 0.48
VPS52Q8N1B4 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VPS52Q8N1B4 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 TUBB3P1-201ENST00000405796 1332 ntBASIC18.06■□□□□ 0.48
VPS52Q8N1B4 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 GPS2P2-201ENST00000430745 888 ntBASIC18.06■□□□□ 0.48
VPS52Q8N1B4 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.06■□□□□ 0.48
VPS52Q8N1B4 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms