Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 AC004854.2-201ENST00000608450 1441 ntBASIC10.36□□□□□ -0.75
LINC00643Q86TS7 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 MIR564-202ENST00000385049 94 ntBASIC10.36□□□□□ -0.75
LINC00643Q86TS7 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 AL139327.4-201ENST00000612362 153 ntBASIC10.36□□□□□ -0.75
LINC00643Q86TS7 MIR7108-201ENST00000614319 87 ntBASIC10.36□□□□□ -0.75
LINC00643Q86TS7 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 AC034236.2-201ENST00000606662 1610 ntBASIC10.36□□□□□ -0.75
LINC00643Q86TS7 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
LINC00643Q86TS7 SLC9A3P3-201ENST00000457608 2229 ntBASIC10.35□□□□□ -0.75
LINC00643Q86TS7 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 AC132938.6-201ENST00000623828 1655 ntBASIC10.35□□□□□ -0.75
LINC00643Q86TS7 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 AC073869.1-201ENST00000415574 2762 ntBASIC10.35□□□□□ -0.75
LINC00643Q86TS7 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 AL645728.1-201ENST00000366221 2101 ntBASIC10.35□□□□□ -0.75
LINC00643Q86TS7 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 AC005104.2-201ENST00000427818 678 ntBASIC10.35□□□□□ -0.75
LINC00643Q86TS7 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 AC104187.1-201ENST00000607510 612 ntBASIC10.35□□□□□ -0.75
LINC00643Q86TS7 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 AC087481.3-201ENST00000602886 1894 ntBASIC10.35□□□□□ -0.75
LINC00643Q86TS7 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 Z82170.1-201ENST00000625081 3192 ntBASIC10.35□□□□□ -0.75
LINC00643Q86TS7 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 STX3-203ENST00000529177 1571 ntTSL 2 BASIC10.35□□□□□ -0.75
LINC00643Q86TS7 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC10.35□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms