Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 DUSP5P1-201ENST00000441325 1139 ntBASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 AP005901.3-202ENST00000581653 237 ntBASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PPP4R4Q6NUP7 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 AC006538.1-201ENST00000567905 1585 ntBASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 TSPY26P-202ENST00000565928 3884 ntBASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 AL450487.1-201ENST00000426799 995 ntBASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 AL732292.2-201ENST00000609649 430 ntBASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 AL121772.3-201ENST00000610840 674 ntBASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 AL691432.3-201ENST00000621860 400 ntBASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PPP4R4Q6NUP7 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 AL391256.1-201ENST00000443260 1855 ntBASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 AC246785.2-201ENST00000432512 513 ntBASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 KRT126P-201ENST00000549467 1181 ntBASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 AC091304.2-201ENST00000564639 760 ntBASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 EGFEM1P-202ENST00000431685 1563 ntBASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PPP4R4Q6NUP7 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms