Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 OR7E14P-202ENST00000530490 1290 ntBASIC16.1■□□□□ 0.17
HMGCS1Q01581 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 AL031731.1-201ENST00000642131 2094 ntBASIC16.1■□□□□ 0.17
HMGCS1Q01581 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGCS1Q01581 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGCS1Q01581 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 AC046158.3-201ENST00000624947 2558 ntBASIC16.09■□□□□ 0.17
HMGCS1Q01581 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 GGT4P-201ENST00000623672 1708 ntBASIC16.09■□□□□ 0.17
HMGCS1Q01581 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 AC073621.1-201ENST00000392730 636 ntBASIC16.09■□□□□ 0.17
HMGCS1Q01581 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 EMBP1-201ENST00000458200 901 ntBASIC16.09■□□□□ 0.17
HMGCS1Q01581 AC107918.2-201ENST00000530817 355 ntBASIC16.09■□□□□ 0.17
HMGCS1Q01581 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 KRT8P39-201ENST00000396270 1433 ntBASIC16.09■□□□□ 0.17
HMGCS1Q01581 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGCS1Q01581 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
HMGCS1Q01581 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.09■□□□□ 0.17
HMGCS1Q01581 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGCS1Q01581 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGCS1Q01581 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGCS1Q01581 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
HMGCS1Q01581 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.08■□□□□ 0.17
HMGCS1Q01581 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGCS1Q01581 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGCS1Q01581 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HMGCS1Q01581 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 AC004870.1-201ENST00000315132 882 ntBASIC16.08■□□□□ 0.16
HMGCS1Q01581 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 RNPS1P1-201ENST00000507437 918 ntBASIC16.08■□□□□ 0.16
HMGCS1Q01581 AC073648.2-201ENST00000510116 352 ntBASIC16.08■□□□□ 0.16
HMGCS1Q01581 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 AC091167.2-201ENST00000579581 588 ntBASIC16.08■□□□□ 0.16
HMGCS1Q01581 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 TP73-AS1-207ENST00000624167 988 ntBASIC16.08■□□□□ 0.16
HMGCS1Q01581 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGCS1Q01581 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.08■□□□□ 0.16
HMGCS1Q01581 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms