Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC13.49□□□□□ -0.25
CX3CL1P78423 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CX3CL1P78423 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
CX3CL1P78423 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC13.49□□□□□ -0.25
CX3CL1P78423 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC13.49□□□□□ -0.25
CX3CL1P78423 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
CX3CL1P78423 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC13.49□□□□□ -0.25
CX3CL1P78423 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC13.49□□□□□ -0.25
CX3CL1P78423 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13.49□□□□□ -0.25
CX3CL1P78423 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CX3CL1P78423 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC13.48□□□□□ -0.25
CX3CL1P78423 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 LINC00554-201ENST00000564841 3011 ntBASIC13.48□□□□□ -0.25
CX3CL1P78423 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CX3CL1P78423 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
CX3CL1P78423 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CX3CL1P78423 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC13.48□□□□□ -0.25
CX3CL1P78423 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
CX3CL1P78423 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC13.48□□□□□ -0.25
CX3CL1P78423 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC13.48□□□□□ -0.25
CX3CL1P78423 AC087163.2-201ENST00000457299 853 ntBASIC13.48□□□□□ -0.25
CX3CL1P78423 PENK-208ENST00000523051 772 ntTSL 5 BASIC13.48□□□□□ -0.25
CX3CL1P78423 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 DUX4L17-201ENST00000557360 1267 ntBASIC13.48□□□□□ -0.25
CX3CL1P78423 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC13.48□□□□□ -0.25
CX3CL1P78423 AC008667.4-201ENST00000607370 168 ntBASIC13.48□□□□□ -0.25
CX3CL1P78423 MIR7706-201ENST00000613747 67 ntBASIC13.48□□□□□ -0.25
CX3CL1P78423 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC13.48□□□□□ -0.25
CX3CL1P78423 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC13.48□□□□□ -0.25
CX3CL1P78423 ABBA01031661.1-201ENST00000634362 1253 ntBASIC13.48□□□□□ -0.25
CX3CL1P78423 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
CX3CL1P78423 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
CX3CL1P78423 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.48□□□□□ -0.25
CX3CL1P78423 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.48□□□□□ -0.25
CX3CL1P78423 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
CX3CL1P78423 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC13.48□□□□□ -0.25
CX3CL1P78423 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 WT1-209ENST00000530998 2421 ntTSL 2 BASIC13.48□□□□□ -0.25
CX3CL1P78423 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CX3CL1P78423 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CX3CL1P78423 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
CX3CL1P78423 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CX3CL1P78423 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CX3CL1P78423 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 HLA-A-201ENST00000376802 1334 ntBASIC13.47□□□□□ -0.25
CX3CL1P78423 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CX3CL1P78423 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CX3CL1P78423 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
CX3CL1P78423 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC13.47□□□□□ -0.25
CX3CL1P78423 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC13.47□□□□□ -0.25
CX3CL1P78423 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC13.47□□□□□ -0.25
CX3CL1P78423 RNA5SP419-201ENST00000515908 135 ntBASIC13.47□□□□□ -0.25
CX3CL1P78423 IGHV3-65-201ENST00000523210 341 ntBASIC13.47□□□□□ -0.25
CX3CL1P78423 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC13.47□□□□□ -0.25
CX3CL1P78423 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.47□□□□□ -0.25
CX3CL1P78423 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC13.47□□□□□ -0.25
CX3CL1P78423 KLK8-205ENST00000593490 267 ntTSL 3 BASIC13.47□□□□□ -0.25
CX3CL1P78423 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.47□□□□□ -0.25
CX3CL1P78423 AC116407.3-201ENST00000623905 1129 ntBASIC13.47□□□□□ -0.25
CX3CL1P78423 AC117500.6-201ENST00000624871 588 ntBASIC13.47□□□□□ -0.25
CX3CL1P78423 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC13.47□□□□□ -0.25
CX3CL1P78423 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CL1P78423 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms