Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.24■□□□□ 0.19
YBX1P67809 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.24■□□□□ 0.19
YBX1P67809 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.24■□□□□ 0.19
YBX1P67809 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
YBX1P67809 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.24■□□□□ 0.19
YBX1P67809 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
YBX1P67809 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
YBX1P67809 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.24■□□□□ 0.19
YBX1P67809 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
YBX1P67809 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.24■□□□□ 0.19
YBX1P67809 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.24■□□□□ 0.19
YBX1P67809 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
YBX1P67809 AL591424.1-201ENST00000442569 1213 ntBASIC16.24■□□□□ 0.19
YBX1P67809 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.24■□□□□ 0.19
YBX1P67809 AL513480.1-201ENST00000451731 511 ntBASIC16.24■□□□□ 0.19
YBX1P67809 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.24■□□□□ 0.19
YBX1P67809 RNA5SP416-201ENST00000516838 111 ntBASIC16.24■□□□□ 0.19
YBX1P67809 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 MIR4492-201ENST00000581627 80 ntBASIC16.24■□□□□ 0.19
YBX1P67809 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.24■□□□□ 0.19
YBX1P67809 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
YBX1P67809 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.24■□□□□ 0.19
YBX1P67809 AL513523.2-202ENST00000427283 2040 ntBASIC16.24■□□□□ 0.19
YBX1P67809 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
YBX1P67809 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.24■□□□□ 0.19
YBX1P67809 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.24■□□□□ 0.19
YBX1P67809 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.24■□□□□ 0.19
YBX1P67809 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
YBX1P67809 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 TUBB8P12-201ENST00000308911 1335 ntBASIC16.23■□□□□ 0.19
YBX1P67809 TUBB7P-202ENST00000428444 1305 ntBASIC16.23■□□□□ 0.19
YBX1P67809 BCAR1-209ENST00000546196 1340 ntBASIC16.23■□□□□ 0.19
YBX1P67809 TUBB8P7-204ENST00000567960 1332 ntBASIC16.23■□□□□ 0.19
YBX1P67809 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.23■□□□□ 0.19
YBX1P67809 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
YBX1P67809 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.23■□□□□ 0.19
YBX1P67809 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 AC131009.4-201ENST00000624048 1740 ntBASIC16.23■□□□□ 0.19
YBX1P67809 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.23■□□□□ 0.19
YBX1P67809 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.23■□□□□ 0.19
YBX1P67809 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
YBX1P67809 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.23■□□□□ 0.19
YBX1P67809 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
YBX1P67809 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.23■□□□□ 0.19
YBX1P67809 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
YBX1P67809 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 SNX33P1-201ENST00000592116 1762 ntBASIC16.23■□□□□ 0.19
YBX1P67809 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.23■□□□□ 0.19
YBX1P67809 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 AC092919.2-201ENST00000623631 1645 ntBASIC16.23■□□□□ 0.19
YBX1P67809 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
YBX1P67809 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
YBX1P67809 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
YBX1P67809 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
YBX1P67809 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
YBX1P67809 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
YBX1P67809 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
YBX1P67809 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.22■□□□□ 0.19
YBX1P67809 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.22■□□□□ 0.19
YBX1P67809 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
YBX1P67809 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
YBX1P67809 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
YBX1P67809 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
YBX1P67809 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.22■□□□□ 0.19
YBX1P67809 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms